Query= MSMg01no380_e01.b1 MSMg01no380_e01.b1 CHROMAT_FILE:
MSMg01no380_e01.b1 PHD_FILE: MSMg01no380_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:16 2005
(258 letters)
>mm_chr17_52369224_52369880
Length = 657
Score = 435 bits (225), Expect = e-126
Identities = 243/249 (97%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 5 gaattcataaaatgtatacataaaattagaggacaacactttgttgtatggcatatgcct 64
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaattcataaaatg-aaaaataaaattagaggacaacactttgttgtatggcatatgcct 394
Query: 65 ccaaattgtgacattccttccaaattgaagtatttgccacaggaaagaaagagactcaga 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccgaattgtgacattccttccaaattgaagtatttgccacaggaaagaaagagactcaga 334
Query: 125 tgtcttgggtagtaaacagtagggacacaaagatcacatgactgtgaagaaaagaagctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgtcttgggtagtaaacagtagggacacaaagatcacatgactgtgaagaaaagaagctt 274
Query: 185 ggaaaattcttaagggcccctaccaacaatgttgcaagtgcacataatttctgaggagag 244
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 273 ggaaaattcttaagggcccctaccaacaatgttccaagtgcatataatttctgaggagag 214
Query: 245 gagaggaga 253
|||||||||
Sbjct: 213 gagaggaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 657
Length adjustment: 9
Effective length of query: 249
Effective length of database: 648
Effective search space: 161352
Effective search space used: 161352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no380_e01.g1 MSMg01no380_e01.g1 CHROMAT_FILE:
MSMg01no380_e01.g1 PHD_FILE: MSMg01no380_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:16 2005
(505 letters)
>mm_chr17_52247551_52248455
Length = 905
Score = 953 bits (493), Expect = 0.0
Identities = 502/505 (99%)
Strand = Plus / Plus
Query: 1 ttcagaaaacctccaataatgccattgcctttcttcaaactttatgaagggtctcatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagaaaacctccaataatgccattgcctttcttcaaactttatgaagggtctcatttc 260
Query: 61 tgtgtatgtaaaaagccaaactcctcacaaggtctaaagccctatcccttcagcttccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtatgtaaaaagccaaactcctcacaaggtctaaagccctatcccttcagcttccta 320
Query: 121 gatccttcctttccagtttcttcagttctaactttcctttaacaccagcctcctgttctg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gatccttcctttccagtttcttcagttctaactttccttcaacaccagcctcctgttctg 380
Query: 181 tgggccttgacttggctaccattgcctccaatgttctccctcttgttgcctcttgactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggccttgacttggctaccattgcctccaatgttctccctcttgttgcctcttgactga 440
Query: 241 tttattgatgttcttcaagcctctatcccaaatccagcctgctcagcccaccgtcacatt 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tttattgatgttcttcaagcctctatcccaaatccagcctgctcagtccaccgtcacatt 500
Query: 301 taacactgcagcatgctcgtccccacaaatacactgccacccactgaaacctctcatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacactgcagcatgctcgtccccacaaatacactgccacccactgaaacctctcatttc 560
Query: 361 tttctcctataacatttgtgaccttttatgcacagttttgattagggttcttatttaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctcctataacatttgtgaccttttatgcacagttttgattagggttcttatttaatg 620
Query: 421 tctgtcttcaccacaactaaaaccttcatgagccaaaagtttctgtttagtttgctgata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtcttcaccacaactaaaaccttcatgagccaaaagtttctgtttagtttgctgata 680
Query: 481 catcccctagtgcctgataaaataa 505
||||||| |||||||||||||||||
Sbjct: 681 catccccgagtgcctgataaaataa 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
