BAC Information

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BAC

Clone NameMSMg01-380E07
Chromosome17 (Build37)
Map Location 48,665,483 - 48,895,123
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380E07.T7 (MSMg01no380_e07.b1)MSMg01-380E07.TJ (MSMg01no380_e07.g1)
ACCAG484685AG484686
length785778
length of high quality
(start - end)
247 (57 - 303)470 (63 - 532)
definitionCHROMAT_FILE: MSMg01no380_e07.b1 PHD_FILE: MSMg01no380_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:17 2005CHROMAT_FILE: MSMg01no380_e07.g1 PHD_FILE: MSMg01no380_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,665,483 - 48,665,729)(48,894,794 - 48,895,123)
sequence
GGCGCTATACGACTCACATTTTCCAAAGACCGCGGAATTCCTAGCTGTCC
TCGATGGCCACATTGATCTTAGGACATTATTCCTGTCACCCTTAGCAGCC
TCTCTGTCCCCCTCTCCCCATTGATCCCTAACAACCCTGATCATCTATTT
TCCTGTCTGGGGAGGTTTGTCACCTTACAGATGCTGTATACAAGAAATAT
GGACTCAGAAAGTCAGAGGCAGGGAATGAAAGGGAATTACAGAGTCAACA
ACTCCAAAGCTGAGACCCAATGCTGAGACCCAGCAGGCCAAGCCAGAAGC
CCGTTTTTTATCACCCCCTGAGACTCCACACGGAGTACCCCAGAATGCAT
AGACTGGTGGGCACAGCGTACCAGGAGACAGGAGTGGCTGGAGGGCCTTT
GCCTGCTAGCTTCATGAAGTGCATAACCTACCATTCATTTTAAGGTACAG
ATGTCTCTGGCAGACAGACTGGCTCCCATCACATCATGAGGCCCCCGTCC
TTCCTCACAGCTCTCCGGATCATCTTGGTCGCATTGTTTGCAATGTTCTT
TATCTGTTATTGTCCCACTTTACTTCCATTGTGGTCCAACTCCTCACTTC
TTTTTTTAGCACCTTGCTTTATGCCATTCACATGTGTTTTCTAACCATTT
TTTAGTTTTTCTTTGTCCTCACCGCCCAATTCATATTATCTATCTTCCCC
GATTTAGGCCTTGTTCTCGCTCCCTTTTTTTCTCCCTCTCTTTATATTTT
TCTCTCTACTCCTACATTTCCCTCCCCTCCCTCTN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTCTAGGGATGATGGCAATGAGAATGCTGTAGTCATT
TTTGGAAAATAGCCCATTAGATTTTAGAGATCCGAATACACATCAACCTA
TGACCCAATAATTCTCTGAGATGTTTACCCAAGAGAAACCAAAATGCATA
AACCTCGGAAGGAGTTTTCCAAAACCACTCAGCGCTGTGCTTTTTCTTAA
TAACCTCAAACTGGAAACAGTCCAAATTATTTATTAGTGGCAGAATGGAT
AGCCAGACTGTATTACTCTGACAGCCAGCGGTGCTTCTTGGAGACACAGA
AGAAGACGCACCTGATGCAGTATGGATGAGGTTCAAAGCCGTTCTGCTGA
GTTGACACAGTTTTGCTCAAAGGCAGATGCGCTAAGCAATCCCATTTGTG
TGTCGCAGTAGAATAGACATATACGTGTGGTATTGTACACCAGAACACTA
TTGCCTGTAGGAGGCAAGGGGTCAATTGAAAGGGAGCAGGAAGGGGTGAT
GGTGTGGCCTGTAAGGACATGTGCTACACTGGTGCAGGCCTGTGCCAGTG
CACGGAGGGCTGAATGCTTAGTGCTGGTGTACACGAATTCCAAACTGATT
CCAATTTTAAAATGGAAGGGGGGAATGGATTAATACATCGTTAAAGGCCA
CTGCTGCCTTTTATTCCTCCCCTCACCTTCCTCCCCCTTCTTCTTCCCCT
TCTTTTCTTTCCCCCCCTTTTCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_e07.b1 MSMg01no380_e07.b1 CHROMAT_FILE:
MSMg01no380_e07.b1 PHD_FILE: MSMg01no380_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:17 2005
         (247 letters)



>mm_chr17_48665283_48665929
          Length = 647

 Score =  400 bits (207), Expect = e-116
 Identities = 237/247 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccacattgatcttaggacattattcctgtcacccttagcagcctctctgtccccctctc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 201 gccacattgatcttaggacattattcctgtcacccttagcagtctctctgtccccctttc 260

                                                                       
Query: 61  cccattgatccctaacaaccctgatcatctattttcctgtctggggaggtttgtcacctt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccattgattcctaacaaccctgatcatctattttcctgtctggggaggtttgtcacctt 320

                                                                       
Query: 121 acagatgctgtatacaagaaatatggactcagaaagtcagaggcagggaatgaaagggaa 180
           | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagatgccgtatacaagaaatagggactcagaaagtcagaggcagggaatgaaagggaa 380

                                                                       
Query: 181 ttacagagtcaacaactccaaagctgagacccaatgctgagacccagcaggccaagccag 240
             ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ggacagagtcaacgactccaaagctgagacccaatgctgagacccagcagcccaagccag 440

                  
Query: 241 aagcccg 247
           |||||||
Sbjct: 441 aagcccg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no380_e07.g1 MSMg01no380_e07.g1 CHROMAT_FILE:
MSMg01no380_e07.g1 PHD_FILE: MSMg01no380_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:17 2005
         (470 letters)



>mm_chr17_48894254_48895123
          Length = 870

 Score =  561 bits (290), Expect = e-164
 Identities = 320/330 (96%)
 Strand = Plus / Minus

                                                                       
Query: 141 cctcggaaggagttttccaaaaccactcagcgctgtgctttttcttaataacctcaaact 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 cctcggaaggagttttccaaaaccactcagcgctgtgctttttcttaataacctcaaact 811

                                                                       
Query: 201 ggaaacagtccaaattatttattagtggcagaatggatagccagactgtattactctgac 260
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 810 ggaaacagtccaaattatttattagtggcagaatggatagccagactgtaatacactgac 751

                                                                       
Query: 261 agccagcggtgcttcttggagacacagaagaagacgcacctgatgcagtatggatgaggt 320
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agccagcggtgcttctcagagacacagaagaagacgcacctgatgcagtatggatgaggt 691

                                                                       
Query: 321 tcaaagccgttctgctgagttgacacagttttgctcaaaggcagatgcgctaagcaatcc 380
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 690 tcaaagccgttctgctgagttgacacagttctgctcaaaggcagatgcgctaagcaatcc 631

                                                                       
Query: 381 catttgtgtgtcgcagtagaatagacatatacgtgtggtattgtacaccagaacactatt 440
           | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 630 cgtctgtgtgtcgcagtagaatagacacatacgtgtggtattgtacaccagaacactatt 571

                                         
Query: 441 gcctgtaggaggcaaggggtcaattgaaag 470
           |||||||||||||| |||||||| ||||||
Sbjct: 570 gcctgtaggaggcatggggtcaactgaaag 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)