| Query= MSMg01no380_h24.g1 MSMg01no380_h24.g1 CHROMAT_FILE:
MSMg01no380_h24.g1 PHD_FILE: MSMg01no380_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:35 2005
(409 letters)
>mm_chr17_65831095_65831903
Length = 809
Score = 694 bits (359), Expect = 0.0
Identities = 386/409 (94%), Gaps = 22/409 (5%)
Strand = Plus / Plus
Query: 1 tctgaaagccaggaaggcactttgggactcagggcatgctatttccactgattagtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tctgaaagccaggaaggcactttgggactcagggcatgctatttccactgattagtttgt 282
Query: 61 attcgctcaaaagagagagagagagagagagagagagagagagagagagagagagagaga 120
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 283 attcgctcaa----------------------gagagagagagagagagagagagagaga 320
Query: 121 gagagagagagagagctagcttttaaattgtggtgtcatggctgagagtccactgaacgt 180
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Sbjct: 321 gagagagagagagagctagcttttaaattgtggtgtcatggctgagagtccactgaacgt 380
Query: 181 tctggtctacagtatctgtctaggttttcaaaacatctcctgctgaaatggtaagttatt 240
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Sbjct: 381 tctggtctacagtatctgtctaggttttcaaaacatctcctgctgaaatggtaagttatt 440
Query: 241 tcagttccccgtgacacaatgttttcaccgatgttcaaaacagaagctactatgacccat 300
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Sbjct: 441 tcagttccccgtgacacaatgttttcaccgatgttcaaaacagaagctactatgacccat 500
Query: 301 acaccgtaagacacaaaaagtcagcagatgtctcccacacatttatcatcgtgcaacgta 360
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Sbjct: 501 acaccgtaagacacaaaaagtcagcagatgtctcccacacatttatcatcgtgcaacgta 560
Query: 361 cacagtcacacgctggtcatttagagctgctacaagaacctgcgagaat 409
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Sbjct: 561 cacagtcacatgctggtcatttagagctgctacaagaacctgcgagaat 609
Score = 118 bits (61), Expect = 6e-31
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 72 agagagagagagagagagagagagagagagagagagagagagagagagagagaga-gaga 130
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Sbjct: 89 agagagagagagagagagagagagagagagagagagagagagagagagagagagaggaga 30
Query: 131 gagag 135
|||||
Sbjct: 29 gagag 25
Score = 116 bits (60), Expect = 2e-30
Identities = 63/64 (98%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 73 gagagagagagagagagagagagagagagagagagagagagagagagagagagaga-gag 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 90 gagagagagagagagagagagagagagagagagagagagagagagagagagagagaggag 31
Query: 132 agag 135
||||
Sbjct: 30 agag 27
Score = 110 bits (57), Expect = 1e-28
Identities = 60/61 (98%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 72 agagagagagagagagagagagagagagagagagagagagagagagaga-gagagagaga 130
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Sbjct: 83 agagagagagagagagagagagagagagagagagagagagagagagagaggagagagaga 24
Query: 131 g 131
|
Sbjct: 23 g 23
Score = 103 bits (53), Expect = 3e-26
Identities = 63/67 (94%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 72 agagagagagagagagagagagagagagagagagagaga-gagagagagag--agagaga 128
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct: 73 agagagagagagagagagagagagagagagagagagagaggagagagagaggcagagaca 14
Query: 129 gagagag 135
|||||||
Sbjct: 13 gagagag 7
Score = 89.7 bits (46), Expect = 3e-22
Identities = 56/60 (93%), Gaps = 3/60 (5%)
Strand = Plus / Minus
Query: 72 agagagagagagagagagagagagagagaga-gagagagagag--agagagagagagaga 128
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 65 agagagagagagagagagagagagagagagaggagagagagaggcagagacagagagaga 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 159
Number of extensions: 60
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 13
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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