BAC Information

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BAC

Clone NameMSMg01-382J13
Chromosome17 (Build37)
Map Location 68,285,693 - 68,286,251
singlet/doubletsinglet
Overlap geneArhgap28
Upstream genePtprm, Lrrc30, Lama1
Downstream geneD930040M24Rik, EG622645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382J13.T7 (MSMg01no382_j13.b1)MSMg01-382J13.TJ (MSMg01no382_j13.g1)
ACCAG486463AG486464
length1,893753
length of high quality
(start - end)		---594 (56 - 649)
definitionCHROMAT_FILE: MSMg01no382_j13.b1 PHD_FILE: MSMg01no382_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:23 2005CHROMAT_FILE: MSMg01no382_j13.g1 PHD_FILE: MSMg01no382_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAGGGTGAGAGACAGCGGATAGGTNGGGAGACAAACCTCCTCACCAGCC
TTATACAGCTGAGACGTGCCCCTACTGCCCACTCGTCCTTGGAGTCTCTT
GCNTTATACTTTATGTGGGTGCTCTCTTATNCTCCCTCCGGGCGCTCTGT
CACCGGCCGTGCCGCGCTGTACGGCGCTCTCGTACGCTCTCTTACTACAG
TGTATCGATACAATTAATCCTTACACACTATAGACGAGATCGCGCGGTCT
CATACCAGGAACCGTCGAAGCACACTCAATAAACNTGCTCAGCAGAATCT
TAGCATGATACGTGACATCATGCTCCTGACGGCGCGCGCGCCGCGCNGAC
ACACACGCACTGGCTGCACCTACATCTTCTACGCCGCGATCTCGCTGTCC
ACGGTATAGCACACGGACCGACCTCAGNACTACACCGGTCTTGAGAGGGC
GAGTGGTGTGTCAGTCTATGGTCGTGAGCGAGAGTTGTTTGTTGCAGAGT
CGTATACGCTACTCCTATCTCTCTGACTCTCTGCGCCTCGTCTTCGCACC
TCGTGCCTAGTCTTGATGTGCTCCTCTCCTCTGTGTGTTGTNTACTATGC
CTCGTCATCTATTCTCTCTATCCTTACTCGCCTCCTGATTAGCATAACAT
GTTACGATGTCTGTCACTTCCTATTCTNCTCCACATTACNGTTCTATTCT
GCATACTCGTATTGTTGAGTGCGTTAGTGTCGTCGCGTGCAGTAAGCGCG
ATCGTAAGTGTACGGCTAGCTGCGTACGTATCTGTGAGTTCGCGNTNGCT
GTGTGTCACCGCCTCTGCTGTGTGTACTCTATCATCCTTGTCTCTGNTCA
TCTGAAAGAGTCNGCTCGCGAAGTGTAGTATGATGTGTACTACGACGCGC
GACACGCTCGCACTGCGTGAGCATCGATGTGCACATCTAGTCCTCGTCNT
GTCTTACTCGTCATGATCTCTCTCGTAACGCGTCACGCGCTGCGCGCAGC
GGTATATGCATTCAATCGCGTGATCACGTGTGCGCGCCGCGCTCACATAC
TATATAGCGAGACGACAAATCGCGACGATGTCNTCGAATCNCGATATGCT
GTAGAAGCATCNCNCATGAGTATCAATGGCAGGCGTAGCGTGCAGACGCA
TCATGCGCACTGCTGCGTCANGNCTGTNTACTATGTATACGTAATACCCT
GACCCACGTGACACGTTCCCGCGCGACGCTCATGTTATTGCGCGTTTATC
GCTACTACAGTTATATCAGTGTGCTATAAGGAAGGCGATCTGGCGACATG
TGCTGTTGCGAGAGTAGGTGATCNTGGACGGTATCGTCTGCGCGNCTATT
TGTTGCCGTATGCTGATGGCTGTATGTCNGCGCGAGTGCTNACCCGAGTA
TACTCGTGTCACGACAGATGCGACAGTGTGCACGACGATCACTCTGCGAG
CGCGCTGTACTATCGAATCAGGCTAGTATGTANANCACTGCGTACGCGGT
CGCATTCCTGCGTCGGTCGCGACGATCGCAGAGAGCGCGGCGCAAGTAGT
ACGACGCCATCGTCAGGTACTATCATCTCTACATGATGCGTCACATGCGA
GTTCATGACNCTGTGACCGAGTTTATCACTTCAGCTTATGCTGTATCTTC
GCGCCACATCTCCTGCATCTCGACCTCTTACTCCGAGGTTAATGCTGAAT
AGTCGCGAGTGGGGATGTCGGTGGAGAGAGACTCGGTCGCTGCGGAGGGC
GTCCACTAGCGCGCAGTACGGCTACGTGTACCNGGCGCGACGCGATAGTC
GCGAGCGATANAGTTACTATCCCACCTAGAATCCTGTACTCTCGCTAGAT
ACGATGCTCATACTTCTCACATATCTATGGTATGTTTGATGAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAATATGACAGAAAACCAGACTCAGCTGGCCTTACCCATCTCACC
CTGCACAGTCAAACTGTGCTGGGTCAGTTAGAGAATGGAGTCAATTCTCC
CCATGTCCAAACCTCTCCTTCAGTGGTCTTCCAGCTGTTCATCATGAATG
CTGATTGACTCTTTGCATAGAAAGAATTCTTAAGATGGACAAGCGCTCTC
TCTCTCTTTCTCTCTTTCTTGGCCTTTTAGCATCAAAGATCGTGAGTTCT
AATTGTTGTTCTTTCAGCTGAAGACATTTGACATGTATTGAAATTCCTCT
TTGGGAATAGAAACAAAGTCAACTAAAAGGCATCCCTCAGGTGAAGACGA
GACTTTGGCTTATCATTTATTTATTTATTTGTTTATTTTCTATTACGCTT
GCACTTTTTTACTTTCCCAGTCCTACTGTTAATGAAAATGAAAAATGATA
TTTTTTTTCCTTTGGGGTCCACACATAGTCTACACATGGGACACCGTTCA
CGGTTCAGAGTGGCAGAAGGGAGCACTCTCAACAGTGCTTGGCATGGGAA
CCCACCCTCTGGAATTCTTATATGGCTTATCTAGGATGTGAGTCAGGCAG
ATATCAAAATAAAAAAATTTTAAGAGTTTTGATATACATTCAGTGTGCTG
GTGAATTGACTGTGGAAATGGGGGCTTCCCGGTTCCCTTGGGATCATATT
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_j13.g1 MSMg01no382_j13.g1 CHROMAT_FILE:
MSMg01no382_j13.g1 PHD_FILE: MSMg01no382_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:23 2005
         (594 letters)



>mm_chr17_68285693_68286686
          Length = 994

 Score = 1015 bits (525), Expect = 0.0
 Identities = 553/565 (97%), Gaps = 6/565 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatgacagaaaaccagactcagctggccttacccatctcaccctgcacagtcaaact 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaatatgacggaaaaccagactcagctggccttacccatctcaccctgcacagtcaaact 500

                                                                       
Query: 61  gtgctgggtcagttagagaatggagtcaattctccccatgtccaaacctctccttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgctgggtcagttagagaatggagtcaattctccccatgtccaaacctctccttcagtg 440

                                                                       
Query: 121 gtcttccagctgttcatcatgaatgctgattgactctttgcatagaaagaattcttaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtcttccagctgttcatcatgaatgctgattgactctttgcatagaaagaattcttaaga 380

                                                                       
Query: 181 tggacaagcgctctctctctctttctctctttcttggccttttagcatcaaagatcgtga 240
           ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 tggatgagcgctctctctctctttctctctttcttggtcttttagcatcaaagatcgtga 320

                                                                       
Query: 241 gttctaattgttgttctttcagctgaagacatttgacatgtattgaaattcctctttggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gttctaattgttgttctttcagctgaagacatttgacatgtattgaaattcctctttggg 260

                                                                       
Query: 301 aatagaaacaaagtcaactaaaaggcatccctcaggtgaagacgagactttggcttatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatagaaacaaagtcaactaaaaggcatccctcaggtgaagacgagactttggcttatca 200

                                                                       
Query: 361 tttatttatttatttgtttattttctattacgcttgcacttttttactttcccagtccta 420
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttatttattt----gtttattttctattacgcttgcacttttttactttcccagtccta 144

                                                                       
Query: 421 ctgttaatgaaaatgaaaaatgatattttttttcctttggggtccacacatagtctacac 480
           ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 143 ctgttaatgaaaatgaaaaatgatattttttt--ctttggggtccacacatggtctacac 86

                                                                       
Query: 481 atgggacaccgttcacggttcagagtggcagaagggagcactctcaacagtgcttggcat 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atgggacaccgttcacggttgagagtggcagaagggagcactctcaacagtgcttggcat 26

                                    
Query: 541 gggaacccaccctctggaattctta 565
           |||||||||||||||||||||||||
Sbjct: 25  gggaacccaccctctggaattctta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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