Query= MSMg01no383_g22.b1 MSMg01no383_g22.b1 CHROMAT_FILE:
MSMg01no383_g22.b1 PHD_FILE: MSMg01no383_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:29 2005
(465 letters)
>mm_chr17_20759853_20760717
Length = 865
Score = 845 bits (437), Expect = 0.0
Identities = 455/461 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagtcaaaatgagccactagagatcatcaaaaactttttccatgaggaagaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaattcaagtcaaaatgagccactagagatcatcaaaaactttttccatgaggaagaaaa 504
Query: 65 aatgcatcattactagaaaataggtaaaatttttgataaacataatgtgaataaaaccat 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 aatgcatcattactagaaaataggtaaaattgttgataaacataatgtgaataaaaccat 444
Query: 125 tgtcaaaaggaaataaattatagttttgtttgattccctagatgttgtatggatttagaa 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtcaaaaggaagtaaattatagttttgtttgattccctagatgttgtatggatttagaa 384
Query: 185 aattttatattttgtgtgtatacgtatttgtagctgtgtaagagatatgaaagtacatta 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 383 aattttatattttgtgtgtatatgtatttgtagctgtgtaagagatatgaaagtacatta 324
Query: 245 taaatgcttaaatcattaaacattaacatcaacaaagtttgatagaaccaggggtgcttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaatgcttaaatcattaaacattaacatcaacaaagtttgatagaaccaggggtgcttc 264
Query: 305 aagacaaagtagaaattgtataatattgattgtcaactaggcataatcaatcaactaatt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagacaaagtagaaattgtataatattgattgtcaactaggcataatcaatcaactaatc 204
Query: 365 tgatgctgcagaccctctgggtccctgtgtctgcgtggaatggatctctcgggcaggtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgatgctgcagaccctctgggtccctgtgtctgcgtggaatggatctctcgggcaggtgg 144
Query: 425 gcaaagcgttggatgaattgaaaaacagatgcacacaggag 465
|||||||||||||||| |||||||||||| |||||||||||
Sbjct: 143 gcaaagcgttggatgagttgaaaaacagacgcacacaggag 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_g22.g1 MSMg01no383_g22.g1 CHROMAT_FILE:
MSMg01no383_g22.g1 PHD_FILE: MSMg01no383_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:29 2005
(402 letters)
>mm_chr17_20622648_20623449
Length = 802
Score = 681 bits (352), Expect = 0.0
Identities = 391/404 (96%), Gaps = 2/404 (0%)
Strand = Plus / Plus
Query: 1 ttcactttattggtgttatagttgcaattattgtttcacttacatggaaatggaaattat 60
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 199 ttcactttattgctgttatagttgcaattattgtttcacttacatgaaaatggaaattat 258
Query: 61 aaaataagcctacacattaaggaaatataacttattaattatagtagaatatatat-t-g 118
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 259 aaaataaacctacacattaaggaaatataacttattaattatagtagaatatatatatca 318
Query: 119 tacttatgcatgaatatatatttatatttatgtgtgtgtatatatgaaatgaaaacaatt 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 319 tacttatgcatgaatatatatttatatatatgtgtgtgtatatatgaaatgaagacaatt 378
Query: 179 caatcttctgaccagaataaaactgagatataatttgatatatgtaaactacaaatatag 238
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 caatcttttgaccagaataaaactgagatataatttgatataagtaaactacaaatatag 438
Query: 239 tggcatatgatttttagtaaatttgatttggtacctagaatgaaagggtagaataagtat 298
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggcatatgatttttagtaattttgatttggtacctagaatgaaagggtagaataagtat 498
Query: 299 tttgggttcaaacacaaaatatctaaatccaggcatgttaagtgacatatttgcaattta 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttgggttcaaatacaaaatatctaaatccaggcatgttaagtgacatatttgcaattta 558
Query: 359 gccaagtaatattaatataagcaaatcaaactataggagtgatg 402
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcaaagtaatattaatataagcaaatcaaactataggagtgatg 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
