Query= MSMg01no383_n12.b1 MSMg01no383_n12.b1 CHROMAT_FILE:
MSMg01no383_n12.b1 PHD_FILE: MSMg01no383_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:59 2005
(570 letters)
>mm_chr17_32578643_32579612
Length = 970
Score = 1017 bits (526), Expect = 0.0
Identities = 556/566 (98%)
Strand = Plus / Plus
Query: 5 gaattcttgatctctgacctcctcatttccagtgtgtacaggcgtgcaccaccaggctga 64
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcttgatcactgacctcctcatttccagtgtgtacaggtgtgcaccaccaggctga 264
Query: 65 cctttgctttcaatccttctagtcctccatggaagagagtctctgctgggctgtgtagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttgctttcaatccttctagtcctccatggaagagagtctctgctgggctgtgtagct 324
Query: 125 cctgtgtgcaacattctgaggaatgagctaatggggacagggaagctcaggtcttcaggc 184
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 325 cctgtgtgcaacattctgaggaacgagctaatggggacagggaagcacaggtcttcaggc 384
Query: 185 tgggcggcaagtgcccttccttgctgtcttagttaggatttctattgctgtgaacagaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggcggcaagtgcccttccttgctgtcttagttaggatttctattgctgtgaacagaca 444
Query: 245 ccatgaccaagacagctcttacagaggacaatatttaattggggcagacttatgggttca 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 ccatgaccaagacagctcttacagaggacaacatttaattggggcagacttatgggttca 504
Query: 305 gaggttcaatccattatcatcaaggtgggagcatggcagtgtccaagcagacttggggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggttcaatccattatcatcaaggtgggagcatggcagtgtccaagcagacttggggct 564
Query: 365 ggaggaaccaaaagttctacatcttgatccaaaggcagacaggagaagaatggctttcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaggaaccaaaagttctacatcttgatccaaaggcagacaggagaagaatggctttcag 624
Query: 425 gcagctaggaggagggtctctcaaagcccacccccgcagtgatactcttcttccaacaag 484
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 625 gcagctaggaggagggtctctcaaagcccacccccacagtgatactcttcctccaacaag 684
Query: 485 gctgcatccccccctagtagtgccactccctaggtcaagcatattcaaaccaccatacct 544
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcagcatccccccctagtagtgccactccctaggtcaagcatattcaaaccaccatacct 744
Query: 545 gctaactggttccctcctgtttttgc 570
|||||| |||| ||||||||||||||
Sbjct: 745 gctaaccggtttcctcctgtttttgc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_n12.g1 MSMg01no383_n12.g1 CHROMAT_FILE:
MSMg01no383_n12.g1 PHD_FILE: MSMg01no383_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:00 2005
(554 letters)
>mm_chr17_32778372_32779331
Length = 960
Score = 971 bits (502), Expect = 0.0
Identities = 539/554 (97%), Gaps = 6/554 (1%)
Strand = Plus / Minus
Query: 1 ttttatcactgattcctgacttgaaggatgctgtaaaaggctggatttggctggctcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttatcactgattcctgacttgaaggatgctgtaaaaggctggatttggctggctcaat 502
Query: 61 tcatgccaagctcttgatactctttctgtgactaggaaagtggccaagattgaggcagag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatgccaagctcttgatgctctttctgtgactaggaaagtggccaagattgaggcagag 442
Query: 121 ctagcctggcacagagaggaaacagggaagg-ttacccagcatgtgtgcctggaccttga 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ctagcctggcacagagaggaaacagggaaggcttacccagcatgtgtgcctggaccttga 382
Query: 180 gtttgga-----tccagtggaacttaggtcactccaagatatgtgtttccagcacccctg 234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttggatcctttccagtggaacttaggtcactccaagatatgtgtttccagcacccctg 322
Query: 235 ttccatccaaggacatggtatactaagcaaaggggtgactttggaatctgcaggctagga 294
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttccatctaaggacatggtatactaagcaaaggggtgacttgggaatctgcaggctagga 262
Query: 295 gatcagaatctggccaacctggtccccaatcatctcctgagctcttgtctaaacaggctg 354
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gatcagaatctggccaacctggtccccaatcatctcctgagctcttctctaaacaggctg 202
Query: 355 ggcaccatgcctgcctagatgctgccatgccttgatgatactggactgaatctctgaacc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaccatgcctgcctagatgctgccatgccttgatgatactggactgaatctctgaacc 142
Query: 415 tgtaagccagccccaaccaaatgttatttttataagagttgccttggtcatggtgtctgt 474
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgtaaaccagccccaaccaaatgttatttttataagagttgccttggtcatggtgtctgt 82
Query: 475 tcacagcaataaaactgtaagacacctaacttactccttgtcaatggatttctcatcctt 534
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcacagcaataaaaccataagacacctaacttactccttgtcaatggatttctcatcctt 22
Query: 535 gcttgggagtttct 548
||||| || |||||
Sbjct: 21 gcttgtgaatttct 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 960
Length adjustment: 10
Effective length of query: 544
Effective length of database: 950
Effective search space: 516800
Effective search space used: 516800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
