BAC Information

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BAC

Clone NameMSMg01-383P02
Chromosome17 (Build37)
Map Location 31,983,470 - 31,983,884
singlet/doubletsinglet
Overlap geneSnf1lk
Upstream geneDnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
Downstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P02.T7 (MSMg01no383_p02.b1)MSMg01-383P02.TJ (MSMg01no383_p02.g1)
ACCAG487495AG487496
length753746
length of high quality
(start - end)		474 (36 - 509)415 (68 - 482)
definitionCHROMAT_FILE: MSMg01no383_p02.b1 PHD_FILE: MSMg01no383_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:07 2005CHROMAT_FILE: MSMg01no383_p02.g1 PHD_FILE: MSMg01no383_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTCT
GTGCATCCCAGGCTGGCCTCAAACCATGGATAGGAATGCTTCAGCCCCCT
AAGTCCTTGAGCTATGCTTTGACAGCTCATAGCAAGGTGGAGCTTTGTGT
AAAGAGGCAACTAGAGGCTGAGTGTGAAGTGGACCCAGGTCTCATTTGCT
TGTAAACAGTGAAAGTTCACATAAATGTAGAACACTGTTTAGACATACCT
TACCTGTACCTCTGAGGCTAGAGGGAAGTCAGGCTGTATTTGTGTGTCAC
CGTAACTCTTCAGGCCATATCAGGCTTTTCCTTCTGAAAATGGGGGAGCT
TTCAAAATGAATTCGATGAATAAGAAGTGAGTGGTTACTCCAAGAGAGCG
GCATTGTGACATGTTCCAGTTAATGGGAGACATAACGTTTTCTGTTTACT
TGGCAGCTGGCTGTATCTGCCTGCTATTGTAGCCTGACAAATGGCAGGGC
ATATTTCCACTTAGCCAGCAAGATCACTTTTACTTTCTTCTGCCTCACTC
ATACCGATTCCCTTGTGGTGCTTCTCACTGGNCTGCCCTGGTCTTCTCAG
AGAACAGTCCTGGACGCGACACCTTGGAGCTCGCCCTCCCAGGCGTTTCC
CTGGGTACCCGTGGCTGGCCCTCTGTACGACCCGCTGGTCCCCGATTCTA
AAATCCACCTGCCCCCTGCTCCCCAGTGCCGGGCATTACCTGGCCTTCCT
TAA

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGACACGAGGAGGCTGTCACAGGGAGCAAGCA
CATAGGGGACCGGGGACAGCTGGGGGCCCTGCTGGCAGCCAGATGAGGCG
GCGGCAGTAGAAGAGTGGTGCTGTAACTGGAGCAGCCTGAAGAACAGAGA
GGCGGAGAGGGAGGAGGTCGGTCACCCTTGTTGGCTCTGCCCGGTTTCCA
CACTGCCCAGGTGGGCCCCACCCACCTCAAAGCTGCAGATGGGATTTCAC
ATAGCTCTGTGTGTGATGTGACACATCCCTGAGCCATCCTGCCCCACATC
CTGGCTGTTGTGGCAACTCAGAGATGTCAGGCTCAACAGGAGAGTCTTGG
TCACCATTGCTCTCAAGGTTACTGAACCTACCCAGTGTCCCTCCTTGCTC
TATCCCTGACATAAAGGTCCCTAAGGAACCACATGGCAGGGCACATCTAA
GCATACAGCGGAATGCTTGTTTCATAGGCTCCTTAAAACAAAGGGCCCGG
AGCCCGGGAATGTGTGTCGGCCCTACCTCTGCTGGTGCAGGACCTCTTCA
AGTAGGCTCCCGCCCTCCCGATTGCTGGTCGTGCCGCCTTGCCGGCCGGA
TCTTGGCGCTGGGCTGTGCAACGCACTCCTCCCCTCCCGGGTATTTCCTA
CTGACGTCTGTCCCCCCCTGTCTTGCACCCCCCTCGACCTGGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p02.g1 MSMg01no383_p02.g1 CHROMAT_FILE:
MSMg01no383_p02.g1 PHD_FILE: MSMg01no383_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:07 2005
         (415 letters)



>mm_chr17_31983270_31984084
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacacgaggaggctgtcacagggagcaagcacataggggaccggggacagctgggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacacgaggaggctgtcacagggagcaagcacataggggaccggggacagctgggggc 260

                                                                       
Query: 61  cctgctggcagccagatgaggcggcggcagtagaagagtggtgctgtaactggagcagcc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cctgctggcagccagatgaggcggcggcggtagaagagtggtgctgtaactggagcagcc 320

                                                                       
Query: 121 tgaagaacagagaggcggagagggaggaggtcggtcacccttgttggctctgcccggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tgaagaacagagaggcggagagggaggaggtcggtcacccttgttggctctgcccagttt 380

                                                                       
Query: 181 ccacactgcccaggtgggccccacccacctcaaagctgcagatgggatttcacatagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacactgcccaggtgggccccacccacctcaaagctgcagatgggatttcacatagctc 440

                                                                       
Query: 241 tgtgtgtgatgtgacacatccctgagccatcctgccccacatcctggctgttgtggcaac 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgtgacgtgacacatccctgagccatcctgccccacatcctggctgttgtggcaac 500

                                                                       
Query: 301 tcagagatgtcaggctcaacaggagagtcttggtcaccattgctctcaaggttactgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagagatgtcaggctcaacaggagagtcttggtcaccattgctctcaaggttactgaac 560

                                                                  
Query: 361 ctacccagtgtccctccttgctctatccctgacataaaggtccctaaggaaccac 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacccagtgtccctccttgctctatccctgacataaaggtccctaaggaaccac 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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