BAC Information

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BAC

Clone NameMSMg01-384L11
Chromosome17 (Build37)
Map Location 29,087,615 - 29,088,125
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1
Downstream geneKctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L11.T7 (MSMg01no384_l11.b1)MSMg01-384L11.TJ (MSMg01no384_l11.g1)
ACCAG488087AG488088
length739744
length of high quality
(start - end)		517 (35 - 551)496 (66 - 561)
definitionCHROMAT_FILE: MSMg01no384_l11.b1 PHD_FILE: MSMg01no384_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:04 2005CHROMAT_FILE: MSMg01no384_l11.g1 PHD_FILE: MSMg01no384_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCAGA
ACAGCCAGGGCTACACAGAGGAAACCATGTCTCAAAACAAACCAAATACG
ACCACCAACACAGTAATGTCACAAAAAAGCCAACACAGTAATGAGATCAT
GTGCTGGCATCTCTGGGCCTTGGAACTACAGAGAACATACCCACTGATTA
AAATTTCATTCCAAAAGTTTCCTCTTCTAATCCTGTGCCCCTGTGCAGTC
TCCATACCCACGGTGGAACTACTGCCTTTCTTGTTCTGAATACAGGACAA
TCAACTTCCTCTTTCTTTCATTTCCAAGCTCCCCTCACCCATCCTGAGCC
AACACTTAATACTTGTTATCCATCGCCCAGAGGGGATCCAAGATAGCACA
TACTTAACTAATAGTGAAGAGTAAAAGGGTTGTCTTTTGATTAAATATCA
TTAAATCAGACATGACACCGATTTTGGATGAATATCAATTATAGGAGGCA
TATGAGAAATGTGTATTAATGTCGACTTTTGTCACTTTAATTTAACTGTA
TCCTCAGTCAGGCTGAGTTCTGAGTTCAGGCCTGGCTGGGCTACAGAGTG
AGNTCCAGGACAGCCAGGCTACACAGAAAACCCGGTCTTTGAAAAAAAAA
AACAATTTAAGGAACCCCCAAATTTGACTAGGGTCATCTCCGAAAAGGAA
CCCTTCCAAAAACAAATGGCAGGCCGGGAATTTCTTGTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGTGTCAGTGGCAGCTTCTGCCAGGCTTCACAT
CCTAGTCAATGCTACAGAGGCTGCGGGAGTGTTTTGGTGCCTTGTGTGTT
TATGTGTTTAAATTGGACCTCTCCTGTAGCCCAGTCTGGCCCCCAACTAC
CTATGTAGACAAGGATTGCCCTTGAACTTCTGATCCTCCTGCCTCTGATT
CTCAAGAGCTCGGATTCCAGGCACTGGTGCTGAGAATCAATCTCGGGGTT
TTGTGCGTGCTTGGCAAGAGCTCTACCAGCCTAGCTATGTCCCCAGCCCA
CTAAGAGTGGAAGGTGTTTTGTTTTGTTTTTTTCCAGACAGGGTTTCTCT
TTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCA
AACTCAGAAATCTGACTGCCTCTGCCTCCCAAGAGCTGGGATTAAAGGCA
TGTGCCACCACTGCCCAACAAGAGTGGAAATCTTAAGCAGAGTGCTGATA
CTGTCTGTCAGATTTGGAGGGCATGGCCAGCAGCTTCTGATAAAAGAGCA
AGAATCCCCTGGGAAGAAACAAGTGCTGAATAGCCCCCCCCCACATATAC
ACCTTGTTTTTGAATTACAGTGTGGGGTTCCCTGTGTTACACCTGATTCC
CCCCCCAGCCCTACTTGTTATTATCCCTTTTTCTCGTTTGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l11.b1 MSMg01no384_l11.b1 CHROMAT_FILE:
MSMg01no384_l11.b1 PHD_FILE: MSMg01no384_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:04 2005
         (517 letters)



>mm_chr17_29087353_29088269
          Length = 917

 Score =  988 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccagaacagccagggctacacagaggaaaccatgtctcaaaacaaaccaaatacg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaattccagaacagccagggctacacagaggaaaccatgtctcaaaacaaaccaaatacg 714

                                                                       
Query: 67  accaccaacacagtaatgtcacaaaaaagccaacacagtaatgagatcatgtgctggcat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 accaccaacacagtaatgtcacaaaaaagccaacacagtaatgagatcatgtgctggcat 654

                                                                       
Query: 127 ctctgggccttggaactacagagaacatacccactgattaaaatttcattccaaaagttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctctgggccttggaactacagagaacatacccactgattaaaatttcattccaaaagttt 594

                                                                       
Query: 187 cctcttctaatcctgtgcccctgtgcagtctccatacccacggtggaactactgcctttc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cctcttctaatcctgtgcccctgtgcagtctccatacccacggtggaactactgcctttc 534

                                                                       
Query: 247 ttgttctgaatacaggacaatcaacttcctctttctttcatttccaagctcccctcaccc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttgttctgaatacaggacaatcaacttcctctttctttcatttccaagctcccctcaccc 474

                                                                       
Query: 307 atcctgagccaacacttaatacttgttatccatcgcccagaggggatccaagatagcaca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atcctgagccaacacttaatacttgttatccatcgcccagaggggatccaagatagcaca 414

                                                                       
Query: 367 tacttaactaatagtgaagagtaaaagggttgtcttttgattaaatatcattaaatcaga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tacttaactaatagtgaagagtaaaagggttgtcttttgattaaatatcattaaatcaga 354

                                                                       
Query: 427 catgacaccgattttggatgaatatcaattataggaggcatatgagaaatgtgtattaat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catgacaccgattttggatgaatatcaattataggaggcatatgagaaatgtgtattaat 294

                                          
Query: 487 gtcgacttttgtcactttaatttaactgtat 517
           |||||||||||||||||||||||||||||||
Sbjct: 293 gtcgacttttgtcactttaatttaactgtat 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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