Query= MSMg01no385_d09.b1 MSMg01no385_d09.b1 CHROMAT_FILE:
MSMg01no385_d09.b1 PHD_FILE: MSMg01no385_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:43 2005
(502 letters)
>mm_chr17_83525441_83526342
Length = 902
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%)
Strand = Plus / Minus
Query: 1 aagaaactctgctgataacagcttatcaacctggttcccatttatggagagtttagctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aagaaactctgctgataacagcttatcaacctggttcccatttatggagagtttagctgt 701
Query: 61 tgaactaagtgctttgtgcgttttatgccattgatttctcttgtccaccccagaatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgaactaagtgctttgtgcgttttatgccattgatttctcttgtccaccccagaatgtat 641
Query: 121 ggtgggcatttaaaaacctttattttatagatggaacaggggtacacagtgccgaataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggtgggcatttaaaaacctttattttatagatggaacaggggtacacagtgccgaataac 581
Query: 181 tggcacagaagttatacaactggaattgacccctggtgaatgctgaccacttggagtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tggcacagaagttatacaactggaattgacccctggtgaatgctgaccacttggagtgag 521
Query: 241 gggacttctggcaagtttctggaatctggatgttttgaactctttgaggactatagaccc 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gggacttctggcaagtctctggaatctggatgttttgaactctttgaggactatagaccc 461
Query: 301 tctaggctgtaagtgtgcagagctcttcttagaaaattcacagttagggtggtggaagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctaggctgtaagtgtgcagagctcttcttagaaaattcacagttagggtggtggaagag 401
Query: 361 agatggctctgtagctaagagcacttgctgctcctgcagaagacccaggttctattccca 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 400 agatggctctgtagctaagagcacttgctgctcctgtagaagacccaggttctattccca 341
Query: 421 gcacttacatggttggtggctcacaagtctttaactccaggaatctgacaccttttcctg 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 340 gcacttacatggttggtggctcacaagtctgtaactccaggaatctgacaccttttcctg 281
Query: 481 acctccattaggtaccatcagg 502
||||||||||||||||||||||
Sbjct: 280 acctccattaggtaccatcagg 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_d09.g1 MSMg01no385_d09.g1 CHROMAT_FILE:
MSMg01no385_d09.g1 PHD_FILE: MSMg01no385_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:43 2005
(433 letters)
>mm_chr17_83350932_83351761
Length = 830
Score = 685 bits (354), Expect = 0.0
Identities = 417/450 (92%), Gaps = 20/450 (4%)
Strand = Plus / Plus
Query: 1 atcagggaggctttaaaaaaaaacaacgaaaaacaaacgaaacaaaaacagattaacgat 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 atcagggaggctttaaaaaaaaat---gaaaaacaaacgaaacaaaaacagattaacgat 257
Query: 61 ttctttggactccgtttcactttgaagaaagtgttttatgattatgttttatttgtttgt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttctttggactctgtttcactttgaagaaagtgttttatgattatgttttatttgtttgt 317
Query: 121 ttattttcttcaaataccattgatgtagcatccacaatagcctgctgcttttca------ 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttattttcttcaaataccattgatgtagcatccacaatagcctgctgcttttcaaatcga 377
Query: 175 -----------tggaaacgtaatatagagttgatgattgagcgtggctcgctgagagaat 223
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtactatgacgtggaaacgtaatatagagttgatgattgagcgtggctcgctgagagaat 437
Query: 224 gtggggcagaggaccgcgagaggtaacctggtaagtttgagctgggttggaagccccggg 283
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 438 gtggggcagaggaccgagagaggtaacctggtaagtttgagctgggttggaagccccagg 497
Query: 284 gacccaaagggactataagagcttcacctgctctggacaccaggcccttgtcacacagcc 343
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 498 gacccaaagggactataggagcttcacctgctccggacaccaggcccctgtcacacagcc 557
Query: 344 acagttccccatataaagaggtgtgaccgtcagtcacataggggcagcacccgcaaggcc 403
|||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 558 acagctccccatagaaagagttgtgaccgtcagtcacataggggcagcacccacaaggcc 617
Query: 404 ctttgcaaacgaggcatcccgaacatctca 433
||||||| | ||||||||||||||||||||
Sbjct: 618 ctttgcagatgaggcatcccgaacatctca 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 830
Length adjustment: 9
Effective length of query: 424
Effective length of database: 821
Effective search space: 348104
Effective search space used: 348104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
