XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATT
TTCACAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTT
TCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTAT
ATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATTC
CTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGATCT
TGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCAT
AAGATTTTTTGTTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTT
TAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTT
TCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTC
TTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTT
TTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATG
GGACTGTTTAAAAAGGTAACTTGATCCTGATTCAACTTTGGTACCTGGTA
TCTGTCCAAAAATTTGTCCATTTTCGCCAAGGTTTTCTGTTTTTTTTGAA
AAAGCCTTTCTTAAAAAGACCTGACGTTGGCTCGCGATCTTACACAATTC
GAGGCATTTCCTTTTTTTTACATTTTTTATTTTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACGCAGCCCAGCTGCCCAGCCAAGGAACCGATTTC
ATTTACAGCTCTTATCTGGAACCTCCAGTAGGTGATTAAATGGCAGAAGG
AAAAGAAGATAAGTGCCTGTGGGCTCATCAATACAGACCACACCAAATGA
GATTCAAACATTTGTAGCTTTGGTTTTTATCCCCACCCTACTCCATCCCT
CCATCCCTCCATTGTACATGGTTGTCCACAGTCGACAGATGTCCTCTGTG
ATGCTCTTATGCACGGGATTCTCAACTGAGCTCTAAACAACAGAAATAGA
AGATCACTATCCTGGGAAGACAAAGGAAATCCTAACAGCACAGAGCTAGC
TATGTGAGGTCTTGGGTGCAGTTGAGCTTAGCTTGAGTTGAGGAAGTTGT
AGTGCTCATACACGTGCATAGAACACAGAAATGATCTCCTGACTTATTCA
GAAAAGAGAAAGGGCTGCCTGATCTGACTCTACCTGATACCTACAATTCC
ACTGGGCTCAGGATGCATGTCCATTATAAGCTATCCCTTACTCCGTCTCA
AATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTNTTNNTNNN
TTTNAANNATTTANCCCACACTATCCTTCTTTTACCTCCNCTACCCTTTT
TTTCCTATTCCACANAATTCACTACTTCTCTTTTTTTCCTAN

Query= MSMg01no385_h13.g1 MSMg01no385_h13.g1 CHROMAT_FILE:
MSMg01no385_h13.g1 PHD_FILE: MSMg01no385_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:03 2005
         (464 letters)



>mm_chr17_44270658_44271521
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgcagcccagctgcccagccaaggaaccgatttcatttacagctcttatctggaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cacgcagcccagctgcccagccaaggaaccgatttcatttacagctcttatctggaacct 605

                                                                       
Query: 61  ccagtaggtgattaaatggcagaaggaaaagaagataagtgcctgtgggctcatcaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccagtaggtgattaaatggcagaaggaaaagaagataagtgcctgtgggctcatcaatac 545

                                                                       
Query: 121 agaccacaccaaatgagattcaaacatttgtagctttggtttttatccccaccctactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agaccacaccaaatgagattcaaacatttgtagctttggtttttatccccaccctactcc 485

                                                                       
Query: 181 atccctccatccctccattgtacatggttgtccacagtcgacagatgtcctctgtgatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atccctccatccctccattgtacatggttgtccacagtcgacagatgtcctctgtgatgc 425

                                                                       
Query: 241 tcttatgcacgggattctcaactgagctctaaacaacagaaatagaagatcactatcctg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcttatgcacgggattcttaactgagctctaaacaacagaaatagaagatcactatcctg 365

                                                                       
Query: 301 ggaagacaaaggaaatcctaacagcacagagctagctatgtgaggtcttgggtgcagttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggaagacaaaggaaatcctaacagcacagagctagctatgtgaggtcttgggtgcagttg 305

                                                                       
Query: 361 agcttagcttgagttgaggaagttgtagtgctcatacacgtgcatagaacacagaaatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcttagcttgagttgaggaagttgtagtgctcatacacgtgcatagaacacagaaatga 245

                                                       
Query: 421 tctcctgacttattcagaaaagagaaagggctgcctgatctgac 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctcctgacttattcagaaaagagaaagggctgcctgatctgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)