BAC Information

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BAC

Clone NameMSMg01-385I10
Chromosome17 (Build37)
Map Location 71,370,560 - 71,558,973
singlet/doubletdoublet
Overlap geneMyom1, Lpin2
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Downstream geneEmilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385I10.T7 (MSMg01no385_i10.b1)MSMg01-385I10.TJ (MSMg01no385_i10.g1)
ACCAG488706AG488707
length758756
length of high quality
(start - end)
504 (26 - 529)474 (57 - 530)
definitionCHROMAT_FILE: MSMg01no385_i10.b1 PHD_FILE: MSMg01no385_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:07 2005CHROMAT_FILE: MSMg01no385_i10.g1 PHD_FILE: MSMg01no385_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,370,560 - 71,371,057)(71,558,500 - 71,558,973)
sequence
TATACGACTCACTATTCCGAGAGGATCCGCGGAATTCTGTCCCCTGACCC
CTCACGGAAGGAGAGAACGGGTGCTGAGAAGTTGTCCTCTGTGCTCCGTG
TACATGCTGTGACACACATGCACCCCCTAGACGCACAAAATCAATTACCT
GATAGATAGATATGAAATGCCAGAGCCACACCGAGGCCAGATTCTTTATA
TTCCTATATGGATTCTCCCATATTTCTATATGGAATAAACACTGTTCTGC
CTTTTTGTAATGTGTGCACAATTTGAAAGAACTCCCAATTATAGAAATTA
TCATACTGTGAGGTTCAGCTTTTCTGTGCGCAGTCACTCACATCCGTCTC
CTGCCTCCTGGGAAAGGGCGGCACCATGAGGTCTTAGCTGATCTGAGGCT
TGCACAAATCAGGCTGGCCTCAAATTCACAGAGACCCACCTGTCTCTCTC
TGCCTCCAGAGCGCTGGGATTGAAGGTGTGCACCACCGCCCAGAGAGCTT
TCTGCTTTCCAGCTTCACCTATGTGCAGTTGCCTCCAAGATCCAGATATC
CATCCCGTACCTTGAACTTTAAAGTCACACATCCGGCTTCCCACTTAAAA
CCTCCGCTGGATAGCGTAGTAGGTTCCTCAGATAGAGAATATCTCAGGCT
GGCTTTGAAGTTTTTCCCTCCCTCGTACCAAGGTATTTTACTTTTCTTCC
CCCATTCTGAATAATGGGACGCTTCTTTTTTCCACCTAGTCTATGCCCAA
AAACCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGGATAGCCAGGGCTACACAGAGAAACCCTGTTTTGAACCCCA
CTCCCCACCTCCAAATAAAACAAAAAACACAAGTAGACTTAGATATGTTA
TGATCAGAAACCTATGTTTAAAGGGTCAAGTTCTAAACTTTCTCTCCCTC
ACACTCCCAGCCTTAAACCTTCTACTTACAATGTGATAACTATACTACTA
GTCTATTTTGGTAGTGATAATAACTTCAAGGTCTCTAAAATAAACACAGA
AGTCTGGTCCTTTGGCTTCCACATAAAGTCATCCAGTTTTAGTAAGTTGC
TATAGAAACCATGCTTTCTACCTCAGGGATGACTATTAAATATACGGGCA
GTACAATGTACAATATACAATTTCCTTTGAAGCATCCCTCCTTACTGGAG
GTTCTTTTTACTTATGCACTGACTTCTAAGCCAAGAATTAATATGTGCTG
GAGCTGTGGGTTAGCAGGTAAGACTGTGGATCCAAAAGACCTCAGTTTGA
ACTCCAGCTACTGTTTGATGGCTCCCAGCCATCTTGACTGTCATTTCTGG
GCTGGAGACATGTCTCAAAGGGTAAGAGCACTGACTGCTTTTTCAGAGTT
CCTGAGATCCATTCCCCCCTATCTTTTTGAGTTTTCTGTATTAACATTTA
CTGGCCTCCTTCTTGGGTGGCTTGAACACTTCTCTTTGGACCCTTTTTTA
TGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_i10.b1 MSMg01no385_i10.b1 CHROMAT_FILE:
MSMg01no385_i10.b1 PHD_FILE: MSMg01no385_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:07 2005
         (504 letters)



>mm_chr17_71370354_71371257
          Length = 904

 Score =  872 bits (451), Expect = 0.0
 Identities = 487/499 (97%), Gaps = 2/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgtcccctgacccctcacggaaggagagaacgggtgctgagaagttgtcctctg 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgtcccctgagccctcacggaaggagagaacgggtgctgagaagttgtcctctg 266

                                                                       
Query: 67  tgctccgtgtacatgctgtgacacacatgcaccccctagacgcacaaaatcaattacctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgctccgtgtacatgctgtgacacacatgcaccccctagacgcacaaaatcaattacctg 326

                                                                       
Query: 127 atagatagatatgaaatgccagagccacaccgaggc-cagattctttatattcctatatg 185
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 327 atagatagatatgaaatgccagagccacaccgag-ctcagattctttatattcctatatg 385

                                                                       
Query: 186 gattctcccatatttctatatggaataaacactgttctgcctttttgtaatgtgtgcaca 245
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 386 gattctcccatatttctatatggaataaatactgttctgcctttttgtaatgtgtgcaca 445

                                                                       
Query: 246 atttgaaagaactcccaattatagaaattatcatactgtgaggttcagcttttctgtgcg 305
           |||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct: 446 atttgaaagaactcccaattatagaagttatcagaccgtgaggttcagcttttctgtgcg 505

                                                                       
Query: 306 cagtcactcacatccgtctcctgcctcctgggaaagggcggcaccatgaggtcttagctg 365
           ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 506 cagtcactcacatccgtctcctgccgcctgggaaagggtggcaccgtgaggtcttagctg 565

                                                                       
Query: 366 atctgaggcttgcacaaatcaggctggcctcaaattcacagagacccacctgtctctctc 425
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atctgaggcttgcacaaaccaggctggcctcaaattcacagagacccacctgtctctctc 625

                                                                       
Query: 426 tgcctccagagcgctgggattgaaggtgtgcaccaccgcccagagagctttctgctttcc 485
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgcctccagagcactgggattgaaggtgtgcaccaccgcccagagagctttctgctttcc 685

                              
Query: 486 agcttcacctatgtgcagt 504
           |||||||||||||||||||
Sbjct: 686 agcttcacctatgtgcagt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no385_i10.g1 MSMg01no385_i10.g1 CHROMAT_FILE:
MSMg01no385_i10.g1 PHD_FILE: MSMg01no385_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:07 2005
         (474 letters)



>mm_chr17_71558261_71559134
          Length = 874

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggctacacagagaaaccctgttttgaaccccactccccacctccaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 caggatagccagggctacacagagaaaccctgttttgaaccccactccccacctccaaat 654

                                                                       
Query: 61  aaaacaaaaaacacaagtagacttagatatgttatgatcagaaacctatgtttaaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaaacaaaaaacacaagtagacttagatatgttatgatcagaaacctatgtttaaagggt 594

                                                                       
Query: 121 caagttctaaactttctctccctcacactcccagccttaaaccttctacttacaatgtga 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 593 caagttctaaactttctctccctcacactcccagctttaaaccttctacttacaatgtga 534

                                                                       
Query: 181 taactatactactagtctattttggtagtgataataacttcaaggtctctaaaataaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taactatactactagtctattttggtagtgataataacttcaaggtctctaaaataaaca 474

                                                                       
Query: 241 cagaagtctggtcctttggcttccacataaagtcatccagttttagtaagttgctataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cagaagtctggtcctttggcttccacataaagtcatccagttttagtaagttgctataga 414

                                                                       
Query: 301 aaccatgctttctacctcagggatgactattaaatatacgggcagtacaatgtacaatat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 413 aaccatgctttctacctcagggatgactattaaatatacgggtagtacaatgtacaatat 354

                                                                       
Query: 361 acaatttcctttgaagcatccctccttactggaggttctttttacttatgcactgacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acaatttcctttgaagcatccctccttactggaggttctttttacttatgcactgacttc 294

                                                                 
Query: 421 taagccaagaattaatatgtgctggagctgtgggttagcaggtaagactgtgga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 taagccaagaattaatatgtgctggagctgtgggttagcaggtaagactgtgga 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)