Query= MSMg01no386_b23.b1 MSMg01no386_b23.b1 CHROMAT_FILE:
MSMg01no386_b23.b1 PHD_FILE: MSMg01no386_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:52 2005
(628 letters)
>mm_chr17_58125859_58126886
Length = 1028
Score = 920 bits (476), Expect = 0.0
Identities = 515/528 (97%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 5 gaattcagctgaaatgtcctgatagatgaagcaggtatttccataacaaggccacaagaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctgaaatgttctgatagatgaagcaggtatttccataacaaggccacaagaa 264
Query: 65 caattctagtgaggcctaaaggaggaacacttacaacaagataaggtgagaataaaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattctagtgaggcctaaaggaggaacacttacaacaagataaggtgagaataaaaaag 324
Query: 125 tatctcaggaggggcacgagagagatggttcagtggttaagaccacccgtttctcttgca 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatctcaggaggggcgcgagagagatggttcagtggttaagaccacccgtttctcttgca 384
Query: 185 gagcaaccaggtttggttctcagcaccacatagtggttcacagctatcactgtctccagt 244
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 gagcaaccaggtttggttctcagcaccacatagtggttcaaagctatcactgtctccagc 444
Query: 245 tctattgaaatacataacatcttctgacctccaggagcaccagacatgcacatgaagtac 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctattgaattacataacatcttctgacctccaggagcaccagacatgcacatgaagtac 504
Query: 305 ttgtagaatggtagtaaaatgttcttatacacaaaacaaatgaaacttttaaacaatcat 364
||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 ttgaagaatggcagtaaaatgttcttacacacaaaacaaatgaaacttttaaacaatcaa 564
Query: 365 ttaaaa-acaccagaagactgagtgtgaatatgtacacatataatctcagcattccaggc 423
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaatatacttcagaagactgagtgtgaatatgtacacatataatctcagcattccaggc 624
Query: 424 agcagtgataggatcttgagtttgaaataagcttgattaatataatgagatcctgtgtaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcagtgataggatcttgagtttgaaataagcttgattaatataatgagatcctgtgtaa 684
Query: 484 gaaatgaaaagagatctatgagaatgaagcacttgtctcagaaatttg 531
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaatgaaaagagatctatgagaatgaagcacttgtctcagaaatttg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_b23.g1 MSMg01no386_b23.g1 CHROMAT_FILE:
MSMg01no386_b23.g1 PHD_FILE: MSMg01no386_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:52 2005
(621 letters)
>mm_chr17_58186411_58187431
Length = 1021
Score = 1185 bits (613), Expect = 0.0
Identities = 619/621 (99%)
Strand = Plus / Minus
Query: 1 tgataattaagttggtgatgtaaagtctctagcaatgggtatgagctcttgtcttctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgataattaagttggtgatgtaaagtctctagcaatgggtatgagctcttgtcttctttc 715
Query: 61 ccagtcacctctgaaaggtatccaagttgggtgtcacagagccacatggacttgtcatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccagtcacctctgaaaggtatccaagttgggtgtcacagagccacatggacttgtcatgg 655
Query: 121 acatcagaaggggcagctaagctgatgaatttatggcactgtggaacaagactatccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acatcagaaggggcagctaagctgatgaatttatggcactgtggaacaagactatccaag 595
Query: 181 cctgcctgtctgagttgattctgaggaacagctcttggaagctgaccttcacaggtgagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cctgcctgtctgagttgattctgaggaacagctcttggaagctgaccttcacaggtgagc 535
Query: 241 agtagcaaacacacacagatagacatatgcacacagcaaagaataaaaatgtaataaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agtagcaaacacacacagatagacatatgcacacagcaaagaataaaaatgtaataaaaa 475
Query: 301 atttaaagacattgatttgaatctaggtgtgtatgtatgcatatgcctacacttgcatac 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atttcaagacattgatttgaatctaggtgtgtatgtatgcatatgcctacacttgcatac 415
Query: 361 atgggagtcagagaccaacatggagggttattcttaaggctctacccatggtgtttttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atgggagtcagagaccaacatggagggttattcttaaggctctacccatggtgtttttca 355
Query: 421 agacaatgtctgtcttcaggacttgaggctcactgagatgtgagcaccagaaatccatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agacaatgtctgtcttcaggacttgaggctcactgagatgtgagcaccagaaatccatct 295
Query: 481 gtatttgtttccacatctctgagttttaaatgtttaccataacaccaggctttctttgaa 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 294 gtatttgtttccacatctctgagttttaaatgtttgccataacaccaggctttctttgaa 235
Query: 541 cattaatgaatgagttagttattgattttatttattttttgtcaatttgacacaaactga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cattaatgaatgagttagttattgattttatttattttttgtcaatttgacacaaactga 175
Query: 601 ggtatctaggaagagggaccc 621
|||||||||||||||||||||
Sbjct: 174 ggtatctaggaagagggaccc 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
