Query= MSMg01no386_g04.b1 MSMg01no386_g04.b1 CHROMAT_FILE:
MSMg01no386_g04.b1 PHD_FILE: MSMg01no386_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:11 2005
(494 letters)
>mm_chr17_67913410_67914304
Length = 895
Score = 903 bits (467), Expect = 0.0
Identities = 485/491 (98%), Gaps = 3/491 (0%)
Strand = Plus / Plus
Query: 6 gaattccaagcagta-tcatgtcttggacccaaaaagaaaaaagcaagttaattgtctca 64
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaagcaggagt-atgtcttggacccaaaaagaaaaaagcaagttaattgtctca 264
Query: 65 tgatttattataaatataggtatgtgtggtataaaaaggaaggaaaaaa-ttacatttct 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 tgatttattataaatataggtatgtgtggtataaaaaggaaggaaaaaatttacatttct 324
Query: 124 gatcgttgatagctgcatgctttctgaaagttgtgctttttcacatctgtgcttccagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcgttgatagctgcatgctttctgaaagttgtgctttttcacatctgtgcttccagaa 384
Query: 184 agacaaacagaaacagggcactgactgggcatgagtgtgttcataaccgatggatgctgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacaaacagaaacagggcactgactgggcatgagtgtgttcataaccgatggatgctgt 444
Query: 244 gagtttattcttcttcccatggccttgtgtacatctccccaaaatccatgtgagccatag 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gagtttattcttcttcccatggccttgtgtacatctccccaaagtccatgtgagccatag 504
Query: 304 cccacggctacagggcaaatctgtggtgcttaatggatttctttataatcctccacaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccacggctacagggcaaatctgtggtgcttaatggatttctttataatcctccacaaaa 564
Query: 364 gcatgtattggcgttcatcaaactaaaagcatgcaatccatccgatattgatatttatat 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatgtattggtgttcatcaaactaaaagcatgcaatccatccgatattgatatttatat 624
Query: 424 taaaagcaccacaatgtagatgattaaatggtacaaatttcacagtgaaaaattttgctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaagcaccacaatgtagatgattaaatggtacaaatttcacagtgaaaaattttgctt 684
Query: 484 tcggattctaa 494
|||||||||||
Sbjct: 685 tcggattctaa 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_g04.g1 MSMg01no386_g04.g1 CHROMAT_FILE:
MSMg01no386_g04.g1 PHD_FILE: MSMg01no386_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:11 2005
(512 letters)
>mm_chr17_68081360_68082272
Length = 913
Score = 774 bits (400), Expect = 0.0
Identities = 412/416 (99%), Gaps = 1/416 (0%)
Strand = Plus / Minus
Query: 98 ttaaaagctgtgcaccaaggcatgtccttgtcatttgggctctggagaggttggaggtgc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ttaaaagctgtgcaccaaggcatgtccttgtcatttgggctctggagaggttggaggtgc 854
Query: 158 gtaaaaacctgtggcttgttggccagccaacccagcctagtctatgagcccaggaaaatg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gtaaaaacctgtggcttgttggccagccaacccagcctagtctatgagcccaggaaaatg 794
Query: 218 aaagatctcatatgaaaaaaactaaagtgttgtctcctgagggaatgacagacacctaag 277
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 793 aaagatctcatatgaaaaaaactaaagtggtggctcctgagggaatgacagacatctaag 734
Query: 278 gtcaccctttggtcacctcattgtgtacagatgtgtgcatgtactcacacgc-caaaaca 336
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 733 gtcaccctttggtcacctcattgtgtacagatgtgtgcatgtactcacacgcacaaaaca 674
Query: 337 aattgaaatactcatagatgactgagctggataaatagcaagtaaggttctgaccctgta 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aattgaaatactcatagatgactgagctggataaatagcaagtaaggttctgaccctgta 614
Query: 397 cattcacacacatgtacctgtacatacatcatgtgtatacatgacaaatgaagaacttag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cattcacacacatgtacctgtacatacatcatgtgtatacatgacaaatgaagaacttag 554
Query: 457 aacagacacacctaggggaagaccatgtgaagacaggcacctgcaagccaaagaca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aacagacacacctaggggaagaccatgtgaagacaggcacctgcaagccaaagaca 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
