BAC Information

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BAC

Clone NameMSMg01-386K02
Chromosome17 (Build37)
Map Location 57,743,153 - 57,743,836
singlet/doubletsinglet
Overlap genenone
Upstream geneSafb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
Downstream geneCntnap5c, LOC674419, LOC620408, EG545216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386K02.T7 (MSMg01no386_k02.b1)MSMg01-386K02.TJ (MSMg01no386_k02.g1)
ACCAG489553AG489554
length730728
length of high quality
(start - end)		681 (45 - 725)---
definitionCHROMAT_FILE: MSMg01no386_k02.b1 PHD_FILE: MSMg01no386_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:29 2005CHROMAT_FILE: MSMg01no386_k02.g1 PHD_FILE: MSMg01no386_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATCCTCTTCACGACAACAATCCTTTATCCTATTCTCCCATAAGA
GTCCCCAAGCTCCAGCCACTTTTTGGGTGTGGGTGTCTGTATCTGTTTGA
GTCAGCCTCTAGGTGGAGTCTCCCAGAGGACAGCATGATCTTGTCTGCAA
GCACAACAAAATATGGGTCTTAAGTTGGGTTGGTTATTGGTTGGCCATTC
CCTCAGTCTCTGCTCTATATCTTGTGCCTGAATTTCTTGTAGGCAGGATA
AATTTTGAATTGAAAGTTTTGTGGGAAGTTTGGTGTCTCTATTGCTCTAC
TGGGGTTCCTGCATGGTATCAAGAGTTGGCCTCTTCAGGCTTTGTATCCC
CAATGCTGTGAGTCACAACTACAGTAATCCTCAATTGATTCTTGGGTATT
GCCCTTATACAAGGTCTCTGTCTTACTCTGGAGATGCCCCCCCTCAATCC
CATCAGTTTCAGAATTCCATTAATTTCCATGGCCCTCTGGCCGTCTTTCC
TGTCCTTCCCCAATAATGGCTTTCACACCATATGATTAAATAAAACTAAC
GAGTCCAGAGAAATCTAGAGAATGTTCACTGATGAAAGATTTACCCTGCT
TGCATATTAATTGAGAGAAAGGTTGATACAGACAGAGTCAACTGTGAGAA
GGAAAAGGTTACAGCCTTTGAGATGTCTCN

TGCCCGCCGGCGGGGGGGGGGGAATGAAGAGGGGAGGCCAGGNGGAGNCC
CGCAATCCTTACCGCCNNGNNNNNNNNNCNGNTGCAAAAAAAAGGGGNNN
NNNNNNGGGGGGGNGGNNCNNNGGGGGGGGGGGGGGGGCGGGGCGCCCCC
GGGGGGGGGGCGGGCGGGGGGGGGGGGGGGGGGGGGCGGGGGGGCGGCCG
GGGCGCGGGGGGCCGCGGGCGCGCGGGCGGGCGCGGCGGGGGCGGGGGGG
GGGCGGGGCNGGGGGGGCGGGGGGGGGCGCGTCGCGCGCCGGGGGCCCCT
CTTTTTTGGTTCTGGGGCGTGGCGCGTGTTTGGGTGTCTGGTTGTCTGCG
GGGNCGGGCNCCGGGGTGGGCGGTAGCCCTTTTTTGTGTTTTTTGGGCGG
CCGNNGGGGGGGGGGGGCGGCGCGCGGCGCTGTTTTTTTTTTTGGCCCCC
CCTTGCGCCGGCGGGGGGCGGGGGGGGTGTTTGTCGGTCGGCGGTGTGGT
GGGGGCGCGACTTCGAGGAGTGAGGTGGTCGGTCGCTTATAGCATGAGCG
ACGGGAGAATAAGAAGGAGTGGGGATGGAGAATCGGAGGGCTGGAGTGCC
GGTGCAGTCGGGGCGGTTGAGAGAAGGAACGGGGAGTGTGGGGAGGCGCA
CTGGACGGCTGCAGAGAGGAAGTGACGGTGTGGAGAGAGAAAACAGAATA
TGAGATGGGGTGGGGAAGAGAGAGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_k02.b1 MSMg01no386_k02.b1 CHROMAT_FILE:
MSMg01no386_k02.b1 PHD_FILE: MSMg01no386_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:29 2005
         (681 letters)



>mm_chr17_57742956_57744036
          Length = 1081

 Score = 1218 bits (630), Expect = 0.0
 Identities = 669/684 (97%), Gaps = 6/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatcctcttcacgac-aacaatcctttatcctattctcccataagagtcccc 62
           ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattcctatccccttcaggaccaacaatcctttatcctattctcccataagagtcccc 257

                                                                       
Query: 63  aagctccagccactttttgggtgtgggtgtctgtatctgtttgagtcagcctctaggtgg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagctccagccactttttgggtgtgggtgtctgtatctgtttgagtcagcctctaggtgg 317

                                                                       
Query: 123 agtctcccagaggacagcatgatcttgtctgcaagcacaacaaaatatgggtcttaagtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agtctcccagaggacagcatgatcttgtctgcaagcacaacaaaatatgggtcttaagtt 377

                                                                       
Query: 183 gggttggttattggttggccattccctcagtctctgctctatatcttgtgcctgaatttc 242
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 378 gggttggttattggttggccattccctcagtctctgctcgatatcttgtgcctgaatttc 437

                                                                       
Query: 243 ttgtaggcaggataaattttgaattgaaagttttgtgggaagtttggtgtctctattgct 302
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgtaggcaggataaattttgagttgaaagttttgtgggaagtttggtgtctctattgct 497

                                                                       
Query: 303 ctactggggttcctgcatggtatcaagagttggcctcttcaggctttgtatccccaatgc 362
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 ctactggggttcctgcatggtatcaagagttggcctcttcaggcttcgtatccccaatgc 557

                                                                       
Query: 363 tgtgagtcacaactacagtaatcctcaattgattcttgggtattgcccttatacaaggtc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtgagtcacaactacagtaatcctcaattgattcttgggtattgcccttatacaaggtc 617

                                                                       
Query: 423 tctgtcttactctggagatgcc--ccccct---caatcccatcagtttcagaattccatt 477
           ||||||||||||||||||||||  ||||||   |||||||||||||||||||||||||||
Sbjct: 618 tctgtcttactctggagatgcctccccccttctcaatcccatcagtttcagaattccatt 677

                                                                       
Query: 478 aatttccatggccctctggccgtctttcctgtccttccccaataatggctttcacaccat 537
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatttccgtggccctctggctgtctttcctgtccttccccaataatggctttcacaccat 737

                                                                       
Query: 538 atgattaaataaaactaacgagtccagagaaatctagagaatgttcactgatgaaagatt 597
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 atgattaaataaaactaacgagtccagagaaatctagagaatgttcacagatgaaagatt 797

                                                                       
Query: 598 taccctgcttgcatattaattgagagaaaggttgatacagacagagtcaactgtgagaag 657
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 taccctgcttgcatgttaattgagagaaaggttgatacagacagagtcaactgtgagaag 857

                                   
Query: 658 gaaaaggttacagcctttgagatg 681
           ||||||||||||||||||||||||
Sbjct: 858 gaaaaggttacagcctttgagatg 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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