BAC Information

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BAC

Clone NameMSMg01-386M22
Chromosome17 (Build37)
Map Location 33,716,269 - 33,716,712
singlet/doubletsinglet
Overlap geneMyo1f
Upstream geneLOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10
Downstream geneZfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386M22.T7 (MSMg01no386_m22.b1)MSMg01-386M22.TJ (MSMg01no386_m22.g1)
ACCAG489689AG489690
length754749
length of high quality
(start - end)
553 (46 - 598)629 (66 - 694)
definitionCHROMAT_FILE: MSMg01no386_m22.b1 PHD_FILE: MSMg01no386_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:41 2005CHROMAT_FILE: MSMg01no386_m22.g1 PHD_FILE: MSMg01no386_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGA
ATTCCAGAGAATCTCGCTAGCATATCCCTGACTCCCAGGAATATATATGG
GGCAAGGATTACAATCTCATGAGCCTCTTCCCCACTTCCTCTTATGATCT
GGACTTGTCTCTCTTGCCTCCACTCACTTACTTTTAAATTACATGTATGT
ATGTATGTATGTATGTATGTGTCCTGTGCTATGGTGAACATGTAGTCATC
TGAAGCAACTTGTGGGAGTTAGTTCTCTATCATGTAAGTCCTGAGGATTG
AACTTAGGTCCTCAGGCTTGGTGGTAAGCATCTGCTGAGCCATCTCGCTG
ACCATCCACTTACATATTGACTAAGCTTGCTCTTTTCACCAGTCTTTTCT
CTAGATTTCACAGACTGTATGGGGCCACGATCCTTAACATATTCATCTCC
TGTGATGCTCTAAGCTCCTGCTAATTGCACTTACCTTTGTGCTCACCTCA
CGTTTCTTCCCCCCCCCCAGCACATTTCAGAAATTTCTATGTTTCTTTTG
TGTGTGTGTCCATGGATGTGTGAATGAGAGGGTGCATGCTTGTGTAGGTG
TGGGTGTGGAGGCCAGAGGTTAACGCTATGTGTCTTCCTCAACTGTTCTC
ACCATATACATCAAGGAAAGAACTCTTGAATCCAAAGCTTGACGATTGAC
CAGTTTTAGCTAACCACTTTGCTGTCAGAATCTCCTGCCTCTACTTCCCA
CATG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCAGTGTGGGTGCTTTGGTCCTTCTTAGAAGGAGAA
CAAAATACTCACAGGATCAAATATGGAGATAAAGTGTAGAGCAGAGACTG
AAAGAAAGGCCATTCAGAGACTGTTCCACCTGGGGATTCATCCCATATAT
CAAACCCAGACACTATTTTGAATGCCAAGAGGTGCATGCTGAAAGGAGCC
TGATATGTCTATCTCCTGAGGGGCCTTCCAGAGCCTTACAAATACAGAGA
CAGATGCTTGCAGTCTATCCATTGGACTGAGCACAGAGTCCCCAATAGAG
GAGTTAGATAAAGAACCTAAGGAGTTGAAGGGGATTGTAACCCCACAGGG
AGAACAACAATATCAACCAACCAGTCCCCCAAGAGCTCCCAGGGAGAGCC
GCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCCAGCCACCATCCGGAC
CAGAGGACAGGTGTCCGCCTGGCTTGGGAGGCGGCCTCAGCCTCAGCAGC
AGCGGTCGCCATCTGGGTTCCGGGACTCCGCGGGACCTAGGAAATCAGTC
TGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGAGAGGC
GGAAGCACAGAGCCGCTGAGGCAGTACCCTTTGCAGGCTGCAGACAGCCG
GCCACCATCCATACCAGAGGACAGGTGTCCGCCTGGCTCCGGAGGCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_m22.b1 MSMg01no386_m22.b1 CHROMAT_FILE:
MSMg01no386_m22.b1 PHD_FILE: MSMg01no386_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:41 2005
         (553 letters)



>mm_chr17_33715761_33716712
          Length = 952

 Score =  803 bits (415), Expect = 0.0
 Identities = 440/453 (97%), Gaps = 9/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 101 gatctggacttgtctctcttgcctccactcacttacttttaaattacatgtatgtatgta 160
           |||||||||||||||||||||||||||||||||||||||||||||||        | |||
Sbjct: 952 gatctggacttgtctctcttgcctccactcacttacttttaaattac--------acgta 901

                                                                       
Query: 161 tgtatgtatgtatgtgtcctgtgctatggtgaacatgtagtcatctgaagcaacttgtgg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tgtatgtatgtatgtgtcctgtgctatggtgaacatgtagtcatctgaagcaacttgtgg 841

                                                                       
Query: 221 gagttagttctctatcatgtaagtcctgaggattgaacttaggtcctcaggcttggtggt 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 840 gagttagttctctatcatgtaagtcctgaggattgaacttaggtcctcaggcttggtggc 781

                                                                       
Query: 281 aagcatctgctgagccatctcgctgaccatccacttacatattgactaagcttgctcttt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aagcatctgctgagccatctcgctgaccatccacttacatattgactaagcttgctcttt 721

                                                                       
Query: 341 tcaccagtcttttctctagatttcacagactgtatggggccacgatccttaacatattca 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tcaccagtcttttctctagatttcacagactgtatggggccacgatccttaacatattca 661

                                                                       
Query: 401 tctcctgtgatgctctaagctcctgctaattgcacttacctttgtgctcacctcacgttt 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctcctgtgatgctctaagctcctgctaattgcacttacctttgtgctcacctcacgttt 601

                                                                       
Query: 461 cttccccccccccagcacatttcagaaatttctatgtttcttttgtgtgtgtgtccatgg 520
           || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ct-ccgccccctcagcacatttcagaaatttctatgtttcttttgtgtgtgtgtccatgg 542

                                            
Query: 521 atgtgtgaatgagagggtgcatgcttgtgtagg 553
           |||||||||||||||||||||||||||||||||
Sbjct: 541 atgtgtgaatgagagggtgcatgcttgtgtagg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space:   511506
Effective search space used:   511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)