BAC Information

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BAC

Clone NameMSMg01-387B11
Chromosome17 (Build37)
Map Location 17,986,310 - 17,986,645
singlet/doubletsinglet
Overlap geneHas1
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik
Downstream geneFpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387B11.T7 (MSMg01no387_b11.b1)MSMg01-387B11.TJ (MSMg01no387_b11.g1)
ACCAG489907AG489908
length776796
length of high quality
(start - end)
437 (45 - 481)337 (82 - 418)
definitionCHROMAT_FILE: MSMg01no387_b11.b1 PHD_FILE: MSMg01no387_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:02 2005CHROMAT_FILE: MSMg01no387_b11.g1 PHD_FILE: MSMg01no387_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTTACCTCTGTTCCCAATTTTTAATAGGGTTATTTGGTTCTC
TGTAATCTAACTTCTTGAGTTTTTTTTTATATATTGGATATTAACCTTCT
ATCAGATGTAGGGATGGTAAAGATCTTTCCCCAATCTGTTGGTTGCTGTT
ATGTTATGGGACACAATGAAAGCAGTGCTAAGAGGAAAACTCTGAATGTC
TCCAAAAAGAAACTGGAGAGCGCATACACTAGGAGCTTGACAGCAAAACT
GAAAGTTCTAGAACTAAAAAAAGCAAAGAGACCAAAGAGGAGGAAAAGGC
AGGAAATAATCCAACTCAGGGCTGAAAGCTACCAAGTAGAAACAAAAGAA
AGATACAAAGAATCAACCAATCCAGGAGCTGGTTCTTTGAGATAATCAAT
AAGAGAAATAAACCCTTAGCCAAAGTAACCAGAGGGCACAGAGTTAGTAC
CCACATTAACAAAATCAGAAATGAAAAGGGAGACACAGCACCGGAAACTG
AGGAAATCCCCAACATTATCAGATCCACTTACAAAGGCTATGCTCAACAA
AATTGGAAAATCCAAACAAAAGGGACAATTTTCTAAAAAAATCTCAGGTA
CCCCAGTTTATTAAGGACTCCACTTACGATGTTAACCGCCCCCCATCCTC
CCCACTAATAAAAAAACGCCCTCACAATGTATCCCCCATTCAACCCCGAA
CCCAAACCTTGGCCTTTTCTGCCCTN
NNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCATGTACCACTGAAT
GAAAAAGAATCACATCAAAGGGAGAAAGGACTCATAGCAAATGGATAGAT
ATGATTGGCTAAATATCCACATTAAGTCAATTCATCAGTAGTTGGTGAAT
GAATGAATGGATGAATGAATGAGAGTCTGAACGTGTGATGACGAAAGAAG
AAAAGTTTTAAAAGCCTGGCAGATAGCTGTGCAGACAAGTGAGTGAGTGC
TGTGCAAGCTTGAGGACCTAGATTTGAATCCACAGCATCCGTGTAAAAGA
CTAGGTGTGGCTGCATATGCCTGCCTGCAATATAATGCTGGGGGATGGTA
ATGGGAATTGGAGCGNNNNNNNNNNNNNNNTNNCNNNTTNTNNTTNTTTT
TTNTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTNTNNTTNTTTTTTTTTTTTTTT
TTTNNTTTTTTTTTTTTTCTNTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
TTTNTTTTTTNTTTCTTTTNTNTCTTTTTTNTNTCTTTTTTCTTTTCTTT
TTTTNNTTTNNCCCCTCCTTTTTTCTTTTCTTCTCTCTCTTTTTCTTTTT
TNTCTCCTCTCTTCTCTTTTCTCTCTTTCNCTTTCTCTCCCCCCNCCCCN
TCTTTTTTTTCCTCTCCTCCCTCCCTTCTTTTCTTTCTATTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_b11.g1 MSMg01no387_b11.g1 CHROMAT_FILE:
MSMg01no387_b11.g1 PHD_FILE: MSMg01no387_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:02 2005
         (337 letters)



>mm_chr17_17986110_17986846
          Length = 737

 Score =  623 bits (322), Expect = 0.0
 Identities = 332/336 (98%), Gaps = 2/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcatgtaccactgaatgaaaaagaatcacatcaaagggagaaaggactcatagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcatgtaccactgaatgaaaaagaatcacatcaaagggagaaaggactcatagcaaa 260

                                                                       
Query: 61  tggatagatatgattggctaaatatccacattaagtcaattcatcagtagttggtgaatg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tggatagatatgattggctaaatatccacattaaatcaattcatcagtagttggtgaatg 320

                                                                       
Query: 121 aatgaatggatgaatgaatgagagtctgaacgtgtgatgacgaaagaagaaaagttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaatggatgaatgaatgagagtctgaacgtgtgatgacgaaagaagaaaagttttaa 380

                                                                       
Query: 181 aagcctggcagatagctgtgcagacaag--tgagtgagtgctgtgcaagcttgaggacct 238
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 381 aagcctggcagatagctgtgcagacaagagtgagtgagtgctgtgcaagcttgaggacct 440

                                                                       
Query: 239 agatttgaatccacagcatccgtgtaaaagactaggtgtggctgcatatgcctgcctgca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatttgaatccacagcatccgtgtaaaagactaggtgtggctgcatatgcctgcctgca 500

                                               
Query: 299 atataatgctgggggatggtaatgggaattggagcg 334
           ||||||||||||||| ||||||||||||||||||||
Sbjct: 501 atataatgctggggggtggtaatgggaattggagcg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)