BAC Information

Click to search

BAC

Clone NameMSMg01-387J21
Chromosome17 (Build37)
Map Location 25,664,722 - 25,665,133
singlet/doubletsinglet
Overlap genenone
Upstream geneTraf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5
Downstream geneLOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387J21.T7 (MSMg01no387_j21.b1)MSMg01-387J21.TJ (MSMg01no387_j21.g1)
ACCAG490308AG490309
length855809
length of high quality
(start - end)		184 (69 - 252)412 (77 - 488)
definitionCHROMAT_FILE: MSMg01no387_j21.b1 PHD_FILE: MSMg01no387_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:43 2005CHROMAT_FILE: MSMg01no387_j21.g1 PHD_FILE: MSMg01no387_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTATCTCTGTATCCCATTTTTTAATAGGGTTATTTGGTTTTCAG
GAGTCCAACAACAACAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCTTCCAGCTCCTCCTGCGGCTCCCTATTCCGCACTGCA
CCTTGATCCGGGCGGAGGGTTTTCTATAACGCGTAAGCGCGGAATAAAAA
GGGGGGGATAAAATTGTTGTAGGAACTGGCGGGGTGAAGGAGGAGTGGAA
CATCGTTCGATAAACCGACACCAACGATGATAGGAATAATGGGAAGGGCG
ATAAAATGACGACGACGAAAGGAGAGAGCGTCGCGTTCATAGTGTGGTCA
TAGTAACCAAACCGCCGTTATATTTTGCATAGATCGTCAAGAGGGAAAAT
AGTGGGGAAAAATCCAATTTTCCACCCGACATACTTGTCTTAAGGTAAAT
AGCCAAGTTATGCACTCCTTTTCTATACTTAATACGTATAACTCAAACCG
CCCGTTCGCCGCCTTGCCTCCCATATAACCCCCACGGGCACGCTTTATCG
CGATAATCGGCACGCGAATAGCGGCCGGTGATAACGGTATCCCGTACGCA
TCGATTGGCCGCGCGTTTACTTATTTTTATATTTCGGCGCGCATTTGGCG
AAAAGAAAAGTGGCGCGCTATGAAAGTCAGCGGCAACAGTACCGCCCTAT
ATTTT

CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACAACATCTGAATCCTTGCA
AGGAAGGGGTTAGAGCAAGCTTTTGGGTGATATGTGAAGTATCCATCCAA
AGAATTGTTAAACGAATCCAAAGAACAGAACCAGAGATTCACAACTCCTT
TGAGCCTCTTAGGTGAGGGAAGGGAGCCTTGCAAGCTGGTGGCTCTCTCG
CCTCTGGCATCAAAGAGAAGGGAGCTGAAGATTCTGCTTGCCCCTTAGGC
CCTCTCCTAGATGCCTTTAAAACTGTCCATCTACCCATCTGTCTATATAT
TTATCCAGCTTTTAAAACTTCAAAACTTGCAAATAAATTAAAAAAAACAT
CACACTGAAAAATTAACTAGACCCATAGTCGATACAACTCAACGAATTTT
CTGTACAACTAGAATAGGCACTTGGAACGAAAGCTGTGTAATTTCACATG
AAAATTTGCGCTTTCAGTCTCAAACATACTTTGGGTATTTATCCCCCACC
AGAAAACCTGAGAACTTAAAAAAAACTTAATTTTTTAATTCTCTTTAGGA
AATTGGTGGCCTCCACCGGGCAGGACCCTCCATTCCCGGTGGGTTTTGTT
CCTGTCCCGGTTTCTCTCTGTGCTTAAGGGACCCCCCTCTGTTTTTTCAC
TTATTTGCTTATCCTCTAATTTCGTCGTGCATATTTATTAATAATTGGGG
GGGTGCTTCTCTCTTCTCTTTTTTCTCCTCTCCTCCTCTTCTTTTTTTTG
TTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_j21.g1 MSMg01no387_j21.g1 CHROMAT_FILE:
MSMg01no387_j21.g1 PHD_FILE: MSMg01no387_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:43 2005
         (412 letters)



>mm_chr17_25664522_25665333
          Length = 812

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcacaacatctgaatccttgcaaggaaggggttagagcaagcttttgggtgatatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agtcacaacatctgaatccttgcaaggaaggggttagagcaagcttttgggtgatatgtg 553

                                                                       
Query: 61  aagtatccatccaaagaattgttaaacgaatccaaagaacagaaccagagattcacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagtatccatccaaagaattgttaaacgaatccaaagaacagaaccagagattcacaact 493

                                                                       
Query: 121 cctttgagcctcttaggtgagggaagggagccttgcaagctggtggctctctcgcctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cctttgagcctcttaggtgagggaagggagccttgcaagctggtggctctctcgcctctg 433

                                                                       
Query: 181 gcatcaaagagaagggagctgaagattctgcttgccccttaggccctctcctagatgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcatcaaagagaagggagctgaagattctgcttgccccttaggccctctcctagatgcct 373

                                                                       
Query: 241 ttaaaactgtccatctacccatctgtctatatatttatccagcttttaaaacttcaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttaaaactgtccatctacccatctgtctatatatttatccagcttttaaaacttcaaaac 313

                                                                       
Query: 301 ttgcaaataaattaaaaaaaacatcacactgaaaaattaactagacccatagtcgataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgcaaataaattaaaaaaaacatcacactgaaaaattaactagacccatagtcgataca 253

                                                               
Query: 361 actcaacgaattttctgtacaactagaataggcacttggaacgaaagctgtg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 actcaacgaattttctgtacaactagaataggcacttggaacgaaagctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |