MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-387M05
Chromosome	17 (Build37)
Map Location	54,555,544 - 54,555,995
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik
Downstream gene	Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485, LOC677496
Link	Open Mouse BAC browser

Click to get alignment info.

name	Efhb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211482 MGI:3045296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668513 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rab5a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271457 MGI:105926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4921523A10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110332 MGI:3612067
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcaf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18519 MGI:1343094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG628822 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628822 MGI:3648520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 10 Proteins

name	Sgol1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72415 MGI:1919665
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629065 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629065 MGI:3643187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 102 ESTs, 2 Proteins

name	4932415M13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211496 MGI:3608328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ck-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12706 MGI:88404
definition	note : creatine kinase pseudogene 1 pseudo : _no_value

name	EG637939 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:637939 MGI:3647187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins

name	Sult1c2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69083 MGI:1916333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043826 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 109 ESTs, 2 Proteins

name	LOC100043471 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG668523 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668523 MGI:3647884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	LOC629121 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629121
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins pseudo : _no_value

name	Gm324 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224876 MGI:2685170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins

name	Sult1c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20888 MGI:102928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043829 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043829
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG435531 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435531 MGI:3644507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Slc5a7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:63993 MGI:1927126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668529 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 6 Proteins pseudo : _no_value

name	1700025K24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69418 MGI:1916668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Trp53-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22060 MGI:98835
definition	gene_synonym : p53 note : transformation related protein 53, pseudogene pseudo : _no_value

name	LOC240117 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:240117
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG629178 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629178 MGI:3647305
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100043833 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043833
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins pseudo : _no_value

name	LOC100043485 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043485
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	LOC677496 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:677496
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Efhb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363913 GeneID:211482 MGI:3045296
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF hand domain family, member B transcript_id : NM_172497.2

name	Rab5a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345611 GeneID:271457 MGI:105926
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB5A, member RAS oncogene family transcript_id : NM_025887.3

name	4921523A10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386939 GeneID:110332 MGI:3612067
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4921523A10 gene transcript_id : NM_173449.2

name	Pcaf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130526 GeneID:18519 MGI:1343094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : p300/CBP-associated factor transcript_id : NM_020005.3

name	EG628822 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268872 GeneID:628822 MGI:3648520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 10 Proteins product : predicted gene, EG628822 transcript_id : XM_895073.3

name	Sgol1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13386293 GeneID:72415 MGI:1919665
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shugoshin-like 1 (S. pombe) transcript_id : NM_028232.1

name	EG629065 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268746 GeneID:629065 MGI:3643187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 102 ESTs, 2 Proteins product : predicted gene, EG629065 transcript_id : XM_893884.3

name	4932415M13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376574 GeneID:211496 MGI:3608328
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932415M13 gene transcript_id : NM_177599.3

name	4932415M13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226231 GeneID:211496 MGI:3608328
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932415M13 gene transcript_id : NM_001037718.2

name	EG637939 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268750 GeneID:637939 MGI:3647187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : predicted gene, EG637939 transcript_id : XM_001001994.2

name	Sult1c2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130315 GeneID:69083 MGI:1916333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sulfotransferase family, cytosolic, 1C, member 2 transcript_id : NM_026935.4

name	LOC100043826 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268873 GeneID:100043826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 109 ESTs, 2 Proteins product : similar to mitochondrial ribosomal protein S36 transcript_id : XM_001481116.1

name	Gm324 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82993923 GeneID:224876 MGI:2685170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins product : gene model 324, (NCBI) transcript_id : XM_140045.4

name	Sult1c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254553 GeneID:20888 MGI:102928
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sulfotransferase family, cytosolic, 1C, member 1 transcript_id : NM_018751.2

name	LOC100043829 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268875 GeneID:100043829
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043829 transcript_id : XM_001481117.1

name	Slc5a7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41055979 GeneID:63993 MGI:1927126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 5 (choline transporter), member 7 transcript_id : NM_022025.3

name	1700025K24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402057 GeneID:69418 MGI:1916668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700025K24 gene transcript_id : XM_901213.2

name	EG629178 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268758 GeneID:629178 MGI:3647305
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG629178 transcript_id : XM_894020.3

name	Efhb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369684 GeneID:211482 MGI:3045296
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : EF hand domain family, member B protein_id : NP_766085.1

name	Rab5a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385374 CCDS:CCDS28879.1 GeneID:271457 MGI:105926
definition	GO_component : GO:0005769 - early endosome [Evidence IDA] [Evidence ISS]; GO:0030139 - endocytic vesicle [Evidence IDA]; GO:0045121 - lipid raft [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0001726 - ruffle [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS] [Evidence IDA]; GO:0019001 - guanyl nucleotide binding [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006897 - endocytosis [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB5A, member RAS oncogene family protein_id : NP_080163.1

name	4921523A10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734092 GeneID:110332 MGI:3612067
definition	codon_start : 1 product : hypothetical protein LOC110332 protein_id : NP_775625.1

name	Pcaf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52345413 CCDS:CCDS28880.1 GeneID:18519 MGI:1343094
definition	GO_component : GO:0000123 - histone acetyltransferase complex [Evidence IDA]; GO:0000776 - kinetochore [Evidence IDA] GO_function : GO:0004406 - H3/H4 histone acetyltransferase activity [Evidence IDA]; GO:0004402 - histone acetyltransferase activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016573 - histone acetylation [Evidence IDA]; GO:0006473 - protein amino acid acetylation [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS] codon_start : 1 product : p300/CBP-associated factor protein_id : NP_064389.2

name	EG628822 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993873 GeneID:628822 MGI:3648520
definition	codon_start : 1 product : hypothetical protein protein_id : XP_900166.1

name	Sgol1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386294 CCDS:CCDS28881.1 GeneID:72415 MGI:1919665
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0045132 - meiotic chromosome segregation [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : shugoshin 1A protein product : shugoshin-like 1 protein_id : NP_082508.1

name	EG629065 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268747 GeneID:629065 MGI:3643187
definition	codon_start : 1 product : hypothetical protein protein_id : XP_898977.3

name	4932415M13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243962 GeneID:211496 MGI:3608328
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC211496 isoform 2 protein_id : NP_808267.1

name	4932415M13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83423520 GeneID:211496 MGI:3608328
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC211496 isoform 1 protein_id : NP_001032807.1

name	EG637939 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268751 GeneID:637939 MGI:3647187
definition	codon_start : 1 product : similar to RIKEN cDNA 4932415M13 gene protein_id : XP_001001994.2

name	Sult1c2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328501 CCDS:CCDS28883.1 GeneID:69083 MGI:1916333
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : sulfotransferase family, cytosolic, 1C, member 2 protein_id : NP_081211.3

name	LOC100043826 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268874 GeneID:100043826
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481166.1

name	Gm324 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993924 GeneID:224876 MGI:2685170
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140045.4

name	Sult1c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254554 CCDS:CCDS28884.1 GeneID:20888 MGI:102928
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0004062 - aryl sulfotransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006790 - sulfur metabolism [Evidence IDA] codon_start : 1 note : sulfotransferase, phenol preferring 2; sulfotransferase family 1A, phenol-preferring, member 2 product : sulfotransferase family, cytosolic, 1C, member 1 protein_id : NP_061221.2

name	LOC100043829 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268876 GeneID:100043829
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481167.1

name	Slc5a7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543741 CCDS:CCDS28885.1 GeneID:63993 MGI:1927126
definition	GO_component : GO:0016021 - integral to membrane [Evidence NAS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0015220 - choline transporter activity [Evidence IMP]; GO:0005307 - choline:sodium symporter activity [Evidence ISS]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0008292 - acetylcholine biosynthesis [Evidence IMP]; GO:0015871 - choline transport [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0007274 - neuromuscular synaptic transmission [Evidence IMP]; GO:0042136 - neurotransmitter biosynthesis [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IEA]; GO:0007271 - synaptic transmission, cholinergic [Evidence IMP] codon_start : 1 product : solute carrier family 5 (choline transporter), member 7 protein_id : NP_071308.2

name	1700025K24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82993933 GeneID:69418 MGI:1916668
definition	codon_start : 1 product : hypothetical protein LOC69418 protein_id : XP_906306.1

name	EG629178 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268759 GeneID:629178 MGI:3647305
definition	codon_start : 1 product : similar to 4933411K20Rik protein protein_id : XP_899113.3

name	LOC668513 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668513
definition	number : 2 pseudo : _no_value

name	LOC668513 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668513
definition	number : 1 pseudo : _no_value

name	LOC100043471 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043471
definition	number : 1 pseudo : _no_value

name	EG668523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668523
definition	number : 2 pseudo : _no_value

name	EG668523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668523
definition	number : 1 pseudo : _no_value

name	LOC240117 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240117
definition	number : 1 pseudo : _no_value

name	LOC240117 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240117
definition	number : 2 pseudo : _no_value

name	LOC677496 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:677496
definition	number : 1 pseudo : _no_value

name	Trp53-ps (CDS detail)
type	polyA_site
link	vega ensembl
xref
definition	gene_synonym : p53 note : putative

name	Trp53-ps (CDS detail)
type	polyA_signal
link	vega ensembl
xref
definition	gene_synonym : p53 note : putative

name	Ck-ps1 (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	note : region homologous with murine creatine kinase B exon sequences pseudo : _no_value

name	Trp53-ps (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	gene_synonym : p53 note : no similarity to p53 cDNA pseudo : _no_value

name	LOC629121 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268753 GeneID:629121
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins product : similar to Creatine kinase B-type (Creatine kinase B chain) (B-CK) pseudo : _no_value transcript_id : XR_034590.1

name	EG435531 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149268756 GeneID:435531 MGI:3644507
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : predicted gene, EG435531 pseudo : _no_value transcript_id : XR_002194.2

name	LOC668529 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268757 GeneID:668529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 6 Proteins product : similar to Armadillo repeat containing, X-linked 3 pseudo : _no_value transcript_id : XR_034597.1

name	LOC100043833 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268877 GeneID:100043833
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins product : similar to Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport Factor 2 (Ntf2) pseudo : _no_value transcript_id : XR_035013.1

name	LOC100043485 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268760 GeneID:100043485
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : hypothetical protein LOC100043485 pseudo : _no_value transcript_id : XR_034600.1

clone name	MSMg01-433M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-375K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072O24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-147M09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-059K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435P03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-503A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057F13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-062L09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-305M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548M08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-182H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014M19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-387M05.T7 (MSMg01no387_m05.b1)	MSMg01-387M05.TJ (MSMg01no387_m05.g1)
ACC	AG490420	AG490421
length	751	781
length of high quality (start - end)	448 (70 - 517)	398 (83 - 480)
definition	CHROMAT_FILE: MSMg01no387_m05.b1 PHD_FILE: MSMg01no387_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:55 2005	CHROMAT_FILE: MSMg01no387_m05.g1 PHD_FILE: MSMg01no387_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCCTCAGAAATAACTGAAGGTGTGTCCATGTTGGAACTGTGTCATTG ATGGCCATTTTAGAAGTTCAAAAGTCCATGTCATTCTCAGTTTGCTCTTT CCTATTCTGCCCATAAATGTTTTCTTTCATAAATTGCCTTGGTCATGGTT TTTCTTCACAGCAATAGAGAAGTAACTAAGGCACTCTATTAGCTCCCCAT AATGACTGATAGTATTTAAAAGCCACCCAGAATGACCTCTTACAAAGACA GAAATCGTTAAGACAGGAATAATTCATGCCTCTGCACATAACTAAGAAGT ATTATTCTTTAAGACAAAAGAAAATTCTGTCATCTACCATGAACATCTTA TCTGAGAGGTGATTTAGGATTTCTGTTTTTCACCTCTGCTAAAAAACACT AATCCTGATGAACATCATCTGATGCCTTAATTAAAGATAGCAAGGAAAGG ACGTGATTTTCCTGTTTCGCTTCCCCAAAATAATTGCCACAGTAAAAGTT TCAGAAATAAGTGTCTGTCTGCACAGGTACCATTGGGTTAATTTCCCCCC AATTAAAAACCTCCCAAATTCATTCCGAATTCCCCCAAATTTCCCCTTAA AAAAACCCCCCGCCAATAAAACGTTGGGCAGGGAACACCCCAATCAATTT CTTAAACCACTGCGTGTTTTTTCCCAAAAACTTTTCCAAAAACCGCTCCC C	NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTCCTGAAATGAGA AAGCTTATCCTTACCTGTGGAGAATCCTGGTTTCTAGAACCATGACCAAA AGCAACTTGAGAAGGAGTGGGTTTATTTGGCTTACAGGTTAAAGTCCATT ATGGGTAAAAGCCAAGGTAGGAACTCAAAGAAGGAGCTTGAAGCACGAAT TATGAAGGGACACTGCTTACTGGTTTACTTCTTCCAGCTTGCTCATCTAC CTTTTTTTTTTTTAATACAGCTCAGGTTTACTTGCCTAAGGATGTACAGA CAACAGTGGACTCAGACCTCTGATATCATTCAGAAAATGAGAACACGGAC ACATGACAATATGATATGTGCTATGCTTCAGTTGAGGTTTTTCACTTCCT AGGTAAGTCTAGTTTGTGTTACCTTGAAGCTGGTTAGGACAATGCTTTCA TCTCATTTCCATTTTCACTTTTAGCGGTTTTGGTTTGCGTTCAATTTTAC TCTCCATTCCCATCCGTTCCGTTGGGATGTTACCCCCCCTTCCTCCTCTA GTTATCAGGCGCACCCCCTTCCCCATGGTCACCCCCTCCTCTGTGCGGCA CCACCTCCTCCCTCGGGTAACGAACATCACGCGCATTTTCTTCCTCCCGG GTATTCCCCCCCCGTGCGTCGAACACTCTTCCATCCCCCGCTCCTGGCCT TCTCCATTTTCTATCGCCTCCGGTCCTCTCN
quality values	Open. Hide. 6 6 6 6 6 6 7 9 9 9 9 9 9 19 16 15 15 27 26 20 31 19 27 30 28 16 16 17 13 18 21 21 12 12 10 12 9 10 11 16 15 18 23 29 29 22 23 23 24 16 21 18 21 30 29 30 21 19 11 11 15 12 12 9 9 9 8 11 8 10 23 26 40 43 48 57 57 48 48 39 42 42 48 59 59 59 54 42 43 37 43 43 46 33 39 22 22 22 42 43 50 48 57 30 26 15 30 30 57 34 57 57 57 57 43 42 30 32 24 28 32 43 36 47 42 42 39 43 46 48 48 35 39 43 43 37 24 24 16 16 43 44 59 44 37 37 50 50 52 57 57 52 52 47 50 50 37 37 30 42 44 52 52 52 57 57 57 57 52 52 52 44 44 52 52 43 43 35 35 35 57 57 57 57 57 57 57 52 57 44 44 43 43 33 44 44 44 44 68 68 59 38 59 39 34 34 22 22 31 35 35 43 43 57 57 43 52 47 59 43 52 52 52 57 62 62 62 62 62 62 62 62 62 62 62 62 62 62 44 44 35 35 35 43 44 62 62 62 62 62 62 62 68 62 62 43 43 43 38 38 35 47 39 43 62 62 62 62 62 62 62 44 43 35 35 39 38 38 35 35 26 43 43 62 62 62 62 62 57 57 57 57 52 52 52 52 52 52 57 57 57 57 57 57 57 57 57 57 59 59 57 57 52 57 57 57 57 57 57 57 57 57 59 43 39 39 43 59 59 57 59 59 59 59 57 57 57 54 54 57 59 59 59 59 52 59 57 57 57 57 57 50 59 57 57 57 54 54 52 44 44 52 57 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 50 46 40 42 42 48 48 48 57 48 54 48 57 57 57 57 57 57 57 57 57 57 57 57 57 57 43 43 43 57 46 57 48 48 48 44 44 35 32 32 31 32 43 48 43 57 43 43 43 59 34 40 28 28 28 43 43 43 43 43 47 40 59 59 59 59 43 43 48 48 48 48 48 48 43 43 40 40 39 37 37 41 36 35 41 34 34 24 30 30 37 33 37 28 28 28 22 15 24 23 17 17 34 30 41 47 37 37 23 26 12 22 13 23 22 21 28 31 31 39 28 24 24 18 12 25 19 34 34 41 34 24 32 17 20 17 30 25 22 8 8 8 8 10 23 27 27 11 11 11 20 16 20 18 20 20 25 23 20 13 12 12 12 10 10 12 16 16 14 23 18 19 18 18 10 11 11 16 12 12 12 11 11 11 12 12 11 10 9 9 9 9 8 6 6 6 10 6 8 8 8 8 8 10 12 13 11 8 8 8 8 8 8 8 8 10 11 11 9 8 8 8 11 10 9 14 12 12 12 14 8 8 6 6 6 10 10 10 15 8 12 9 9 8 13 12 10 9 10 8 8 9 10 9 14 21 14 10 9 9 8 8 9 10 9 14 10 9 9 9 9 12 17 19 30 20 16 12 12 10 10 9 8 7 7 7 9 12 11 10 9 9 9 14 8 9 9 10 12 11 19 10 10 10 8 8 6 6 7 7 7 10 11 12 8 8 6 6 6 8 10 6 6 6 8 8 11 18 10 10 8 8 8 8 10 10 8 11 10 10 15 15 15 15 12 11 13 14 14 14 12 15 8 8 8 10 10 9 12 13 16 17 11 10 8 8 6 6 6 9 16 12 12	Open. Hide. 0 0 0 3 6 6 6 7 10 12 8 9 9 9 8 7 9 9 9 18 19 31 31 37 35 39 37 37 37 37 37 32 34 41 41 39 27 23 8 6 6 6 6 8 17 10 18 18 31 26 39 37 47 47 53 50 50 42 42 50 50 59 57 57 53 30 27 12 10 17 17 29 21 19 19 27 21 41 41 41 42 50 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 46 46 46 46 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 68 68 68 51 57 57 57 57 68 68 68 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 52 52 52 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 39 39 39 57 57 57 52 52 57 38 34 27 21 29 23 38 36 52 50 50 57 57 57 57 57 52 52 52 59 59 59 57 57 57 68 68 50 50 37 37 39 59 59 68 59 59 43 43 37 44 44 50 50 46 57 46 57 57 57 54 54 48 48 44 48 44 44 32 32 27 27 27 30 30 28 28 23 23 25 32 32 32 28 28 23 28 31 44 44 54 54 54 48 57 57 57 54 57 59 59 35 41 35 32 32 35 35 32 32 28 28 29 30 32 59 39 39 39 39 30 39 39 43 30 30 18 18 18 30 30 32 15 15 11 17 14 34 34 43 28 34 28 28 28 34 34 30 39 33 30 22 17 17 19 16 18 23 34 34 29 22 28 27 17 16 10 12 12 23 25 14 15 14 14 14 16 25 30 30 30 30 15 11 11 13 13 11 21 21 10 9 9 9 9 9 14 29 29 11 11 11 23 25 32 26 15 11 8 8 8 8 9 13 12 10 10 11 12 14 9 6 6 8 8 8 8 11 14 25 11 11 10 10 10 10 12 10 8 8 8 13 13 7 6 6 8 6 8 8 10 8 10 11 8 8 8 8 8 8 10 10 9 9 9 9 9 17 14 9 9 10 16 14 11 11 10 10 10 11 11 16 16 11 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 10 10 14 27 22 11 11 10 10 8 6 8 8 8 8 10 10 9 9 8 10 8 8 8 10 16 11 9 8 8 6 6 6 8 8 8 8 10 8 8 9 9 10 10 10 10 10 9 8 8 6 6 6 6 8 8 8 9 9 10 8 8 8 8 8 8 9 9 9 9 9 9 9 9 11 11 11 9 10 10 10 10 10 11 9 9 14 13 13 10 10 12 11 10 15 10 8 8 8 8 8 8 8 8 8 8 8 10 8 9 9 8 8 6 6 8 17 21 15 10 8 8 8 8 8 8 8 8 8 8 8 10 8 12 8 8 8 8 8 11 11 11 10 10 10 10 8 8 8 8 8 8 6 6 6 10 13 8 8 8 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no387_m05.b1 MSMg01no387_m05.b1 CHROMAT_FILE:
MSMg01no387_m05.b1 PHD_FILE: MSMg01no387_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:55 2005
         (448 letters)



>mm_chr17_54555180_54556031
          Length = 852

 Score =  787 bits (407), Expect = 0.0
 Identities = 441/455 (96%), Gaps = 10/455 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtgtgtccatgttggaactgtgtcattgatggccattttagaagttcaaaagtccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 816 aaggtgtgtccatgttggaactgtgtcattgatggccattttagaagttcagaagtccat 757

                                                                       
Query: 61  gtcattctcagtttgctctttcctattctgcccataaatgttttctttcataaattgcct 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtcattctcagtttgttctttcctattctgcccataaatgttttctttcataaattgcct 697

                                                                       
Query: 121 tggtcatggtttttcttcacagcaatagagaagtaactaaggcactctattagctcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tggtcatggtttttcttcacagcaatagagaagtaactaaggcactctattagctcccca 637

                                                                       
Query: 181 taatgactgat-agtatttaaa-agccacccagaatgacctcttacaaagacagaaatcg 238
           ||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||| 
Sbjct: 636 taatgactgatca-tatttaaaca-ccacccagaatgacctcttacaaagacagaaatca 579

                                                                       
Query: 239 ttaagacaggaataattcatgcctctgcacataactaagaagtattattctttaagacaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttaagacaggaataattcatgcctctgcacataactaagaagtattattctttaagacaa 519

                                                                       
Query: 299 aagaaa-----attctgtcatctaccatgaacatcttatctgagaggtgatttaggattt 353
           ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aagaaaatagtattctgtcatctaccatgaacatcttatctgagaggtgatttaggattt 459

                                                                       
Query: 354 ctgtttttcacctctgctaaaaaacactaatcctgatgaacatcatctgatgccttaatt 413
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgtttttcacctctgct-aaaaacactaatcctgatgaacatcatctgatgccttaatt 400

                                              
Query: 414 aaagatagcaaggaaaggacgtgattttcctgttt 448
           ||||||||||||||||||| |||||||||||||||
Sbjct: 399 aaagatagcaaggaaaggatgtgattttcctgttt 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 852
Length adjustment: 10
Effective length of query: 438
Effective length of database: 842
Effective search space:   368796
Effective search space used:   368796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information