BAC Information

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BAC

Clone NameMSMg01-387P18
Chromosome17 (Build37)
Map Location 90,671,821 - 90,839,991
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387P18.T7 (MSMg01no387_p18.b1)MSMg01-387P18.TJ (MSMg01no387_p18.g1)
ACCAG490589AG490590
length778827
length of high quality
(start - end)		347 (71 - 417)356 (73 - 428)
definitionCHROMAT_FILE: MSMg01no387_p18.b1 PHD_FILE: MSMg01no387_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:12 2005CHROMAT_FILE: MSMg01no387_p18.g1 PHD_FILE: MSMg01no387_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,839,645 - 90,839,991)(90,671,821 - 90,672,176)
sequence
NAATTAATACTCCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGCTTTATCATTTGTGATTTTCTAATGGTAAATATTACATGA
ACGTTTCCTTTCTTTGTCTTATTCTGAAGTCAGGTATGTCTTCTTAAAAA
TAGCAGTATAATTGAATTATGATTTTGCATTCTTTTTGAACTTACTAGAA
TAACAAAAACACTTCTAAAGAGAGACTCTTGGAACACCAAGAGGGATTTT
TCCATGCTAGCAACATACACCTCATCTTACGAATGCAGACTCTGAGACCA
GATTAGGTGTTTCTCCCATAGCTATTCTGTTTATGAGGGTCAAATGTAGG
ACACTTCATCAGCCAAGTCATCCTCAGTGAACACATTTAAATCAAATGAC
TCCCACTATCTTAAACAAGGCCAGAGGAACTAATCATTTTCCTGTTTATA
GGTTAAAATTTCTCTTATATTTGGCCCACTTTATGTACTAAAATTTACTT
AAACTGAGAACATTCGTAACTCACGTGCACCCCATTTTGCTTGAGAAATT
TAAATCTTTCCCTGGTCTAATTTTATAAAATTATGGAAGCGGGTTTTCCA
AAACCGACGCAATTCCCTTTGCAGTGGTGGCAAGAGCAAAACAATGTCTT
CGCTCAAAAACATTTCTCTCCTTTGGCATTTTTCTGCGGCCTGCCCACCC
CACACCCCCCATAATTTTCGCTTCTTCGCCCCCTAACCCCTTCTCTCCGT
NCCCCGCGACTACCACACCTCTCCCCCG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGTTCCCAGCCTCGTGGCAGGCCCAG
GGACCTCAGAACAAGCTCCAGCTTTCCTAAACATAAGACTGTGCTTTATC
ATGCCTGGAGTGGTGGCGTGGGGTAGAGTGCAGTCAAAATCCCCGTGTTC
TGCCTCTCCAAGGAGCTGTGCCCTGTGACGGATGGGCCAACAACTCTACA
TATATGACTAGGATAGTATGAGTTTTTGACAAGTACTTGGCTGTTTGTAT
GAATTTTGTTTACTTCCTCATAAATTACCTCTGTTCTGTGGATTGCTAGT
TTATTGATTCCTAGTTATATTTGGCCAATAATTTTGGAGCAAGAGATAAC
TATGTGGGGTTCCATTTATCATTTTCACAAAATAAACAAACACTTTGGAG
CAGTGTAAGGATGATAGTACTCCCGCTATATACCAACAGTTGATGATTTT
GTTGACCAATAACCCCTACATAATTGGACATCTTGCATTTGATAGGCGCT
TACTAGTTCTTTGGCCCCTCCTTTTCTATTTGATTTTTTGTACCTCTACT
CCTTTTTTTCTTTATTCTTTCCCCCCCCTCTTTCCCTATCGTTGGTCTTT
TTTTCCCTATTTCCTCCCCCCCTCTCACTGTTTACTACCATCTTTCCTTT
CCTGCNCATCTTCTCTTCTTCCTACCTCTTCTCCAACTCCTTTTCTTAGT
ATTTCCTACCCCCCCTTCCTCTTCTCTGTTTTTTTTCACCTCCTTTACTT
TTTCCTTGTATCTTTCTTCCCTGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_p18.b1 MSMg01no387_p18.b1 CHROMAT_FILE:
MSMg01no387_p18.b1 PHD_FILE: MSMg01no387_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:12 2005
         (347 letters)



>mm_chr17_90839445_90840191
          Length = 747

 Score =  632 bits (327), Expect = 0.0
 Identities = 342/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgattttctaatggtaaatattacatgaacgtttcctttctttgtcttattctgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgtgattttctaatggtaaatattacatgaacgtttcctttctttgtcttattctgaagt 488

                                                                       
Query: 61  caggtatgtcttcttaaaaatagcagtataattgaattatgattttgcattctttttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 487 caggtatgtcttcttaaaaatagcagtataattgaattatgattttgcattcttttttaa 428

                                                                       
Query: 121 cttactagaataacaaaaacacttctaaagagagactcttggaacaccaagagggatttt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cttactagaatgacaaaaacacttctaaagagagactcttggaacaccaagagggatttt 368

                                                                       
Query: 181 tccatgctagcaacatacacctcatcttacgaatgcagactctgagaccagattaggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccatgctagcaacatacacctcatcttacgaatgcagactctgagaccagattaggtgt 308

                                                                       
Query: 241 ttctcccatagctattctgtttatgagggtcaaatgtaggacacttcatcagccaagtca 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttctcccatagcaattctgtttatgagggtcaaatgtaggacacttcatcagccaagtca 248

                                                          
Query: 301 tcctcagtgaacacatttaaatcaaatgactcccactatcttaaaca 347
           ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 247 tcctcagtgaagacatttaaatcaaatgactcccactatctcaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_p18.g1 MSMg01no387_p18.g1 CHROMAT_FILE:
MSMg01no387_p18.g1 PHD_FILE: MSMg01no387_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:12 2005
         (356 letters)



>mm_chr17_90671621_90672376
          Length = 756

 Score =  650 bits (336), Expect = 0.0
 Identities = 351/356 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttcccagcctcgtggcaggcccagggacctcagaacaagctccagctttcctaaac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggtcccagcctcgtggcaggcccagggacctcagaacaagctccagctttcctaaac 260

                                                                       
Query: 61  ataagactgtgctttatcatgcctggagtggtggcgtggggtagagtgcagtcaaaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagactgtgctttatcatgcctggagtggtggcgtggggtagagtgcagtcaaaatcc 320

                                                                       
Query: 121 ccgtgttctgcctctccaaggagctgtgccctgtgacggatgggccaacaactctacata 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ccgtgttctgcctctccaaggagctgtgccctgtgacggatgggtcaacaactctacata 380

                                                                       
Query: 181 tatgactaggatagtatgagtttttgacaagtacttggctgtttgtatgaattttgttta 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tatgactaggatagtatgagtttttgacaagtacttggctgtttctatgaattttgttta 440

                                                                       
Query: 241 cttcctcataaattacctctgttctgtggattgctagtttattgattcctagttatattt 300
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 441 cttcctcataaattacctctgttctgtggattgctagcttattgattcctagctatattt 500

                                                                   
Query: 301 ggccaataattttggagcaagagataactatgtggggttccatttatcattttcac 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccaataattttggagcaagagataactatgtggggttccatttatcattttcac 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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