Query= MSMg01no388_f01.b1 MSMg01no388_f01.b1 CHROMAT_FILE:
MSMg01no388_f01.b1 PHD_FILE: MSMg01no388_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:37 2005
(539 letters)
>mm_chr17_53696448_53697385
Length = 938
Score = 957 bits (495), Expect = 0.0
Identities = 528/539 (97%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 1 atgtaacttaacaagaaccatttaaaggaataattttaggaccagtgagatggtttattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtaacttaacaagaaccatttaaaggaataattttaggaccagtgagatggtttattg 260
Query: 61 ggtgcttgctgcgaagactggagacacagcttagatttctaggatctttaaaagtgagga 120
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcttgctgctaagactggagacacaggttagatttctaggatctttaaaagtgagga 320
Query: 121 agactagactagaaatttagcctgttactagctgggtggttttagtccttagacaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agactagactagaaatttagcctgttactagctgggtggttttagtcattagacaaaaga 380
Query: 181 aacaaaggaaagacaagttagagaaagggaggaatattcatgctgtcatggtactgggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaaggaaagacaagttagagaaagggaggaatattcatgctgtcatggtactgggac 440
Query: 241 gtgtcagcagttcataatgggaggctgataatctctctggcagacacattcaatctcacc 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 441 gtgtcagcagttcataatgggaggctgataatctctctggca-acacattcactctcacg 499
Query: 301 tgcacagagacttctctgcctataaagacaagctggccaagacagtggggattctaccag 360
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 500 tgcacagagacttctctgcctataaagaccagctggccaagacagtggggactctaccag 559
Query: 361 gttcagcaggtagggcagggttaaggcaggatagccagatcactcaggaaactgttatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttcagcaggtagggcagggttaaggcaggatagccagatcactcaggaaactgttatca 619
Query: 421 acagagttggctttagcagccaccgaagaataatattgctgttacacaaaggaaaacaca 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acagagttggctttagcagcaaccgaagaataatattgctgttacacaaaggaaaacaca 679
Query: 481 agcaatttagaagtagtagtaatcccacagggctagagagatggagagatgattcagag 539
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 680 agcaatttagaagtagtagtaatcctacagggctagagagatggagagatgagtcagag 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_f01.g1 MSMg01no388_f01.g1 CHROMAT_FILE:
MSMg01no388_f01.g1 PHD_FILE: MSMg01no388_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:37 2005
(530 letters)
>mm_chr3_24425832_24426761
Length = 930
Score = 994 bits (514), Expect = 0.0
Identities = 526/530 (99%)
Strand = Plus / Plus
Query: 1 ttagtcatcagagagcacactaattgagagtgattaggaggtgtggcccttttggattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtcatcagagagcacactaattgagagtgattaggaggtgtggcccttttggattag 260
Query: 61 gtgtgaccatgttgagagaagtgcatcacttggagtgtgctttaaggtttcaaaagtcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgaccatgttgagagaagtgcatcacttggagtgtgctttaaggtttcaaaagtcca 320
Query: 121 acccaaacccagttgctttctctttctactgcctgtgaatcgagatgtagaactctcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccaaacccagttgctttctctttctactgcctgtgaatcgagatgtagaactctcagt 380
Query: 181 ggctcttcaagcactatgtctgactttgtgtggttatacttcctgctatgatgatagatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctcttcaagcactatgtctgactttgtgtggttatacttcctgctatgatgatagatt 440
Query: 241 atacatctgaaaatttaagtgaggtccaatgaaatgttttcttttataagagttgcagtg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 atacatctgaaaatttaagtgaggtccagtgaaatgttttcttttataagagttgcagtg 500
Query: 301 gtcatggtgtgtctttacagcaatcggacagtgactcagacagcaaggaaataaatactc 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 gtcatggtgtgtctttacagcaatcggacggtgactcagacagcaaggaaataaatactc 560
Query: 361 agattttaaaatgagtgaagaaattgatcagacatcctttgacaagcagtattctagaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agattttaaaatgagtgaagaaattgatcagacatcctttgacaagcagtattctagaat 620
Query: 421 gtcaaaaggtgtcatctgccattagtaaggaggtcaatattgatgcagacagcaattgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaaaaggtgtcatctgccattagtaaggaggtcaatattgatgcagacagcaattgtg 680
Query: 481 tgcagcctcacagtggtcagaaggtgagattataagacaagtataaggca 530
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tgcagcctcacagtggtcagaaggtgagattataagacaagtacaaggca 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
