Query= MSMg01no388_k16.b1 MSMg01no388_k16.b1 CHROMAT_FILE:
MSMg01no388_k16.b1 PHD_FILE: MSMg01no388_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:03 2005
(465 letters)
>mm_chr17_77565876_77566737
Length = 862
Score = 855 bits (442), Expect = 0.0
Identities = 456/462 (98%), Gaps = 4/462 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaatctgctcttatttttt-ataaaaagataagtataaactgaggatgtcata 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttaatctgctcttatttttttataaaaagataagtataaactgaggatgtcata 263
Query: 64 ggagtaattataaaagaaatattatattatgatattatttcacatgtgtaaaattttaag 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 ggagtaattataaaagaaatattatattatgatattatttcacgtgtgtaaaattttaag 323
Query: 124 aagaaatgatattatcttgagaagacaaacttaggcaaagttcataataaaagaaagagt 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagaaatgatat---cttgagaagacaaacttaggcaaagttcataataaaagaaagagt 380
Query: 184 aaataagctggcttacaaaaagtatacatgttattgtggctcataattattaaatcagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataagctggcttacaaaaagtatacatgttattgtggctcataattattaaatcagag 440
Query: 244 tgagttatactaaattataatggtgaaaaattatttctgtataaatcaaactgactatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagttatactaaattataatggtgaaaaattatttctgtataaatcaaactgactatgt 500
Query: 304 taaaaacagtgactattctgctagtgtataattccaacaaaatacacatatagtctataa 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaagagtgactattctgctagtgtataattccaacaaaatacacatatagtctataa 560
Query: 364 aaccatctggctaagcaaagggaagaagacaaatatttgcataatattaacttatacata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccatctggctaagcaaagggaagaagacaaatatttgcataatattaacttatacata 620
Query: 424 gaggggcttgtgtcttcattgatattgtaatatatttaacca 465
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggggcttgtgtcttcattgatattgtaatatatttaacca 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 862
Length adjustment: 10
Effective length of query: 455
Effective length of database: 852
Effective search space: 387660
Effective search space used: 387660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_k16.g1 MSMg01no388_k16.g1 CHROMAT_FILE:
MSMg01no388_k16.g1 PHD_FILE: MSMg01no388_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:03 2005
(486 letters)
>mm_chr17_77674640_77675526
Length = 887
Score = 895 bits (463), Expect = 0.0
Identities = 481/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 1 tttcttctccctttaggcaacatttctgtgtcaaaattctgcatgctattgcaagtattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttcttctccctttaggcaacatttctgtgtcaaaattctgcatgctattgcaagtattc 628
Query: 61 tgggaggattatgctgcaggatgagtaagtgcttggtggacacagtgagccatagactct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgggaggatcatgctgcaggatgagtaagtgcttggtggacacagtgagccatagactct 568
Query: 121 tggcattgttatgaggacctacgccatggcaaagaccccattctatgggcaggagctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggcattgttatgaggacctacgccatggcaaagaccccattctatgggcaggagctcag 508
Query: 181 tagaaggtagtatgcctcatttctcagatatacttgctttctccaactttactcccaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tagaaggtagtatgcctcatttctcagatatacttgctttctccaactttactcccaatg 448
Query: 241 atttttaaatctgtcttttcaaacttgacctctggacttctcaaagaaacataaaggccc 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acatttaaatctgtcttttcaaacttgacctctggacttctcaaagaaacataaaggccc 388
Query: 301 tccttttcctttgtctctgcttctttctaaagagtgaacagataatttcagataccaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccttttcctttgtctctgcttctttctaaagagtgaacagataatttcagataccaatc 328
Query: 361 atagcaattttctatcaggttatttctccttgaagggaatgtgtcattgttcaacaactg 420
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 atagcatttttctatcaggttatttctccttgaaaggaatgtgtcattgttcaacaactg 268
Query: 421 aaatattctata-ttttttaccattatatgatatttacagattaagagacaatttaatgc 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaatattctatatttttttaccattatatgatatttacagattaagagacaatttaatgc 208
Query: 480 tatcaca 486
|||||||
Sbjct: 207 tatcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
