Query= MSMg01no389_h24.b1 MSMg01no389_h24.b1 CHROMAT_FILE:
MSMg01no389_h24.b1 PHD_FILE: MSMg01no389_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
(278 letters)
>mm_chr17_45651146_45651823
Length = 678
Score = 472 bits (244), Expect = e-137
Identities = 274/294 (93%), Gaps = 16/294 (5%)
Strand = Plus / Plus
Query: 1 gcagcgggcgttcctacaggatgtggtggtcagtttt----------------atgcacc 44
||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 185 gcagcaggcgttcctacaggatgtggtggtcagttttatggctgtgaacaagcatgcacc 244
Query: 45 tgggccaggtcaggcagacccaacacctgtggctactctcctgccttacagaactgcggg 104
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 245 tgggccaggtcaggcaggcccaacacctgtggctactctcctgccttacagagctgcggg 304
Query: 105 gctcccccttactctggccgggtaggggcagcagatgagggacggatagacacagcgtac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctcccccttactctggccgggtaggggcagcagatgagggacggatagacacagcgtac 364
Query: 165 cgagtggtagccgatcacatccgcacactcagtgtctgcattgctgacggtgtctccccg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cgagtggtagccgatcacatccgcacactcagtgtctgcattgctgacggtgtctccccg 424
Query: 225 gggatgtcaggtgccccgtgagtctggaagggcagggctggcaggggggaaatg 278
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 425 gggatgtcaggtgccccgtgagtctggaagggcagggctgggaggggggaaatg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no389_h24.g1 MSMg01no389_h24.g1 CHROMAT_FILE:
MSMg01no389_h24.g1 PHD_FILE: MSMg01no389_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
(402 letters)
>mm_chr17_45830408_45831209
Length = 802
Score = 729 bits (377), Expect = 0.0
Identities = 395/401 (98%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 1 accactcacttccatatgggaacattccacaaacgccagtcacttggtgcctccgcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 accactcacttccatatgggaacattccacaaacgccagtcacttggtgcctccgcacat 435
Query: 61 cccagcacctcagtgttctcctcggaacacccgtgaagtgctgtgctactctacaatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cccagcacctcagtgttctcctcggaacacccgtgaagtgctgtgctactctacaatcag 375
Query: 121 aaaacaacccgatgaatacagcagccaacccaggcaatcggagcgctggacagatgagcc 180
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 374 aaaacaacccgacgaatacagcagccaacccgggcaatcggagcgctggacagatgagcc 315
Query: 181 cagcttgactaaggacctgtgcaagtcctctagctgtgatcgcaggcatgagcaacgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 cagcttgactaaggacctgtgcaagtcctctagctgtgatcgcaggcatgagcgacgcag 255
Query: 241 aggacgcagtccaggctgctcacccactgcatacctatcagctctcttcttcccttctca 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggacgcagcccaggctgctcacccactgcatacctatcagctctcttcttcccttctca 195
Query: 301 tttcatagaagaggaaactgaggtacagagacttttagtgatctccatagagccccacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tttcatagaagaggaaactgaggtacagagacttttagtgatctccatagagccccacaa 135
Query: 361 cgagccttaggacctctgcacccccagggctttgaattgtc 401
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 134 tgagccttaggacctctgcacccccagg-ctttgaattgtc 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
