Query= MSMg01no390_b13.b1 MSMg01no390_b13.b1 CHROMAT_FILE:
MSMg01no390_b13.b1 PHD_FILE: MSMg01no390_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:54 2005
(431 letters)
>mm_chr17_20800058_20800887
Length = 830
Score = 743 bits (384), Expect = 0.0
Identities = 417/428 (97%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 4 tataattgaattttagtatctgccaagaatatcaatgagaataaaatttatattggtata 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 tataattgaattttagtatctgcaaagaatatcaatgagaataaaatttatattggtata 263
Query: 64 tctaaagataaattacctatattttatgtcaaaaggaattgtaagatgactaatttaatt 123
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tctaaagataaattacctatattttatgtcaaagggaattgtaagatgactaatttaatg 323
Query: 124 atttattattgagagacagtttcaaaacattatataatgtaaaaagtatatgctgagaaa 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttattattgagagagagtttcaaaacattatataatgtaaaaagtatatgctgagaaa 383
Query: 184 gtcacatgaatgtgacagataaaagtatcagtagtaacataggcactagtaaattatcat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 gtcacatgaatgtgacagataaaagtatcagtagtaacataggcactagtaaatgatcat 443
Query: 244 agatcttgtaataccttttccattgataaagtatagatttataattcacactaaagcaat 303
| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 aaatcttggaataccttttccattgataaagtatagatttagaattcacactaaagcaat 503
Query: 304 acctttgtgtatcagacctttcaataatatattggatcgtcgtttatcaggactctatca 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 acctttgtgtatcagacctttcaataatatattggatcgtcatttatcaggactctatca 563
Query: 364 gtacttaggaccactggaggatatagcttagtgctactgcacttaaccagtatgtaaaat 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 gtacttaggac-actggaggatatagcttagtgctactgcacttaaccagtatgtaagat 622
Query: 424 gttctaag 431
||||||||
Sbjct: 623 gttctaag 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space: 346462
Effective search space used: 346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_b13.g1 MSMg01no390_b13.g1 CHROMAT_FILE:
MSMg01no390_b13.g1 PHD_FILE: MSMg01no390_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:54 2005
(511 letters)
>mm_chr17_20966432_20967342
Length = 911
Score = 911 bits (471), Expect = 0.0
Identities = 501/511 (98%)
Strand = Plus / Minus
Query: 1 tttagagctctgggcctctccttcgactccagccctcacaaagttcttctatccagcaat 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tttagagctctgggcctctccctcgactccagccctcacaaagttcttctatccagcaat 652
Query: 61 aaagtcaataacttcctaacacataagttatggaacttaaattcaccccacagtagaata 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 651 aaagtcaataacttcctaacacataagttatggaacttaaaatcaccccacagtagaata 592
Query: 121 aagtcatttggaaattcttggcagttcaatgaggtattagtaaaatgacaagcacaatgt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 591 aagtcatttggaaattcttggcagttcaatgaagtattagtaaaatgacaagcacaatgt 532
Query: 181 tgtaatctacaataaaaaatcattacactcttcatacaaccaaatgcaaaataactggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgtaatctacaataaaaaatcattacactcttcatacaaccaaatgcaaaataactggta 472
Query: 241 atgctggcattaaaatattctagaaattacagttttcatgtttacaataacaggaagtct 300
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atgcttgcatcaaaatattctagaaattacagttttcatgtttacaataacaggaagtct 412
Query: 301 aaatatagccctatcctagaagaatgtttaaatgtaccacttcttaaaaaaattaatcca 360
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 411 aaatatagccccatcctagaagaatgtttaaatataccacttcttaaaaaaattaatcca 352
Query: 361 gcaccacacggtacataaactaatgttaccttcttaattgaaaggcctagaataaagaat 420
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 351 gcaccacatggtacataaactaatgttaccttcttaattaaaaggcctagaataaagaat 292
Query: 421 tctaagattaatgatgaaaatgagaattattcattgttcaataattaataaaaaatgaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tctaagattaatgatgaaaatgagaattattcattgttcaataattaataaaaaatgaag 232
Query: 481 ttattggtttaacatttgccttctatccact 511
|||||||||||||||||||||||| ||||||
Sbjct: 231 ttattggtttaacatttgccttctgtccact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
