CGGGCGCTAAACGACTCCTATAGTTAGXXXXXXXXXXXXXXXXXXXGCCA
GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAAT
CCTGTCTCAAAAAACAACAACAAAAACAACAACAACAAAGAAGAAAAAAA
AAATAAGAAATTAAAAATAATTATATAGAAATTAAAAATAATTATATAGA
CTCTACTCAGGTCTTCTCTACTCAGGTCTTTTTCATTTCTAATGTATTTA
CAAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGATACA
TTTACACAATGGAACACTCCTCAGCTATTAAAAACAATGGATTTATGAAA
TTCCTGGACAAATGGATGTTTCTGGAGGATATCATCCTTAGTGAGGTAAC
CCAATCACAAAAGAAGTCATCAGATAGGCACTCATTGACAAGTGGATATT
AGCCCAGAAACAAAAAACACCCATGTTGAATCCAGTGGAGAAATATGAAA
ATTTCCATGATATCTGCATTTACCTGTCTCATTAGAAATCTCATTGTCTC
CACAAGGAGTGCACTTGTAGCAGCAGATGGCCTTGCCCTCCAAGGTTACT
TTCCTGAATCCAGGCTCACAACTCTCACTGCACACAGACTGAGGAATCTG
AGAAGAATGAGAAGAAAGGTATCTAATGTTTTGTTGTTTATGGAAAAAAA
TCTAAAAACAGAGGTTTTGAAGGGCCTAAACCGAGGCCGG

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGAATCCACAAGGTA
CAACTTTAAAGAGTTGGAAACATTGGCTTTGGAATGTAGAAACAGATTCC
CAGAAGTACAGGAATCTGTATCTAATAAGAATACATGAGTGTGGGCTTAG
ATTAGGAAAAATATTTGTACTATGCTAGTAATTCTTTGGGAAATCCTGAG
TGGTAAGGGACATTCAAGAAGGAGACATAAGTCTCTAGTTAGGATTCAGA
GCCACATAGACCTTTTAGAATATGTATTCTAGGAGATATATGCAATATTG
AAGATATATTTTGGAGAAGAGAGGCCACATCACTCAGAAGAAGAGGGGTG
GGTGTTTCAGAATCCATATTATTCTTAACATAACCAAAGTTAGCCATCAA
TTGGAAAAATGGACAGGAAGAAATGAAGGTTTTAAGTGAGGTTTGAGTAG
ACTGTGGGAAATCCCTGGAAAATGATGGTGGATTGACACATGAAGCTTGT
ATTCATGTCAGACATCTGGACAACCACTAAGAAGCAGTGATCAGATCTTT
TATGAAAGAAAGAAGATAATCTTAATGATACCCTACTTACCTGACTGGTA
ATTGATAGGTCTAATGTTATATTTTACGTTATGAAACCTGCAGCGTTGGC
CCCACCGCTCTACTTGACCTTATTTACATCACTCTTCCGCCTGGTGTCCA
N

Query= MSMg01no391_a04.g1 MSMg01no391_a04.g1 CHROMAT_FILE:
MSMg01no391_a04.g1 PHD_FILE: MSMg01no391_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:05 2005
         (490 letters)



>mm_chr17_19607308_19608197
          Length = 890

 Score =  893 bits (462), Expect = 0.0
 Identities = 483/490 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaatccacaaggtacaactttaaagagttggaaacattggctttggaatgtagaaa 60
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 201 cctggaatccacaaggtacaactttaaggagttggacacattggctttggaatgtagaaa 260

                                                                       
Query: 61  cagattcccagaagtacaggaatctgtatctaataagaatacatgagtgtgggcttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cagattcccagaagtacaggaatctgtatctaataagaatacatgagagtgggcttagat 320

                                                                       
Query: 121 taggaaaaatatttgtactatgctagtaattctttgggaaatcctgagtggtaagggaca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 taggaaaaatatttgtactatgctagtaattctttgggaagtcctgagtggtaagggaca 380

                                                                       
Query: 181 ttcaagaaggagacataagtctctagttaggattcagagccacatagaccttttagaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaagaaggagacataagtctctagttaggattcagagccacatagaccttttagaata 440

                                                                       
Query: 241 tgtattctaggagatatatgcaatattgaagatatattttggagaagagaggccacatca 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattctaggagatatatgcagtattgaagatatattttggagaagagaggccacatca 500

                                                                       
Query: 301 ctcagaagaagaggggtgggtgtttcagaatccatattattcttaacataaccaaagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ctcagaagaagaggggtgggtgtttcagaatccatattattcttaacataaacaaagtta 560

                                                                       
Query: 361 gccatcaattggaaaaatggacaggaagaaatgaaggttttaagtgaggtttgagtagac 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gccatcaattggaaaaatggacaggaagaaatgaaggttttaactgaggtttgagtagac 620

                                                                       
Query: 421 tgtgggaaatccctggaaaatgatggtggattgacacatgaagcttgtattcatgtcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgggaaatccctggaaaatgatggtggattgacacatgaagcttgtattcatgtcaga 680

                     
Query: 481 catctggaca 490
           ||||||||||
Sbjct: 681 catctggaca 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)