BAC Information

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BAC

Clone NameMSMg01-391B21
Chromosome17 (Build37)
Map Location 89,927,485 - 89,927,887
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B21.T7 (MSMg01no391_b21.b1)MSMg01-391B21.TJ (MSMg01no391_b21.g1)
ACCAG492967AG492968
length764799
length of high quality
(start - end)
402 (58 - 459)341 (71 - 411)
definitionCHROMAT_FILE: MSMg01no391_b21.b1 PHD_FILE: MSMg01no391_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:14 2005CHROMAT_FILE: MSMg01no391_b21.g1 PHD_FILE: MSMg01no391_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATAGTTTCACGATCCGCGGAATTCACTGTAA
AGTCTGATGTTATAAACAAATAATCAGGAGTTGCATGGAATTAAATTTCA
ATGTGGTGCCAGAACTGGGGAATCACTTCAAATATATACAGTATTTTTAA
AAACCTGGCTTGTGTAGTTATAAATATTAAATCCAAACCACCAGCATGTG
TCTAATACTTGGAATTTTTCCATGAAATTATGAGGTTTTCACTGATTATT
ATTAGTCTAGAATAACTTTTTCTTCATTGCACAGCTTTCTGCATGCTGTT
AGGAAATATTTGCTTTAGGGAGAGAAATTAACTCTTTCACTTACCATATT
TAAACCAATGGCACTCTTCCTGATCTCTTTGGATAAAATTCCTTTTCCTA
TGTACTAGTGTGACCAGCTACATTAGTGCCCAGGCCCAACTGCTAACAAA
CATGTTGACATCCCCACCTCAGGATCCTTGACTTCCTCAGTCACTATTGC
CCCATCAATACATTAATCCTTCTTTGNCCCGCCTTCTTATAATCCCCCCT
TAATATTAAAAGACACTCTTTTTAATCTACTGACCATGAAATTGTTGATG
TTGACCATGAAAAATTCCCCCATTTTTCCCCCTATAAAATTACCATTCCC
CAATGTTCCTACAAATTACTGATGAAAACGTGGGCTTTTAAGAACAGTTA
AATTTTCCCCAAAAGACACCCGAAAGTTTGAACCCCCGGAAAACAAATCG
GCCCCCTTGGCCAN
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGAGTGCAGGCTTGTACTGCCTAGCTTCTTAACGAC
CATTCTGTGTATGGCTCCTTGGTCCCACACTATCGTATCAGTTTGTTAAC
TCCTTTCATGCCAATTGGAAGGTAAGAAAGTGTGTGTGTATGTGTGTGTG
TGTGTGTGTGCGCCCCCACGCTTCATTCACTTTCTGTTTTGTCCTCTGAT
GTGTGCTAGACATTATATACCATCTGCATGCTTTCTTTTGCTGAATACAT
GTCCGCTCTTCCCCTGCGCACCTATCCCCCTATCCTTTGCCTCTCCCCTT
TCCTACTCCTCGTCTCTCTCCCTCTATTTTCCCCACCCCGCCCCTCCGCC
TGGTCTCATCCCCATTTTCCCCCCCCTCTTCTTACACCGTTGCGCCATAT
TCAACCCATCCCGCCCCTCCCCTTTCCCTTAACTCCTCCCGCTCCACCTC
CCCTTTCTCTTTCCCCTTCTCCCTTTTCTTCCTTCCCTCCTCCTTCTTTT
ATCCTCCCTTCCCCCTCCCCCCCCTCCCCCCTCCTCTATCTTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b21.b1 MSMg01no391_b21.b1 CHROMAT_FILE:
MSMg01no391_b21.b1 PHD_FILE: MSMg01no391_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:14 2005
         (402 letters)



>mm_chr17_89927285_89928087
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttataaacaa-ataatcaggagttgcatggaattaaatttcaatgtggtgccagaact 59
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tgttataaacaagataatcaggagttgcatggaattaaatttcaatgtggtgccagcact 260

                                                                       
Query: 60  ggggaatcacttcaaatatatacagtatttttaaaaacctggcttgtgtagttataaata 119
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggggaatcacttcaaatatatacagtatttctaaaaacctggcttgtgtagttataaata 320

                                                                       
Query: 120 ttaaatccaaaccaccagcatgtgtctaatacttggaatttttccatgaaattatgaggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaatccaaaccaccagcatgtgtctaatacttggaatttttccatgaaattatgaggt 380

                                                                       
Query: 180 tttcactgattattattagtctagaataactttttcttcattgcacagctttctgcatgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcactgattattattagtctagaataactttttcttcattgcacagctttctgcatgc 440

                                                                       
Query: 240 tgttaggaaatatttgctttagggagagaaattaactctttcacttaccatatttaaacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttaggaaatatttgctttagggagagaaattaactctttcacttaccatatttaaacc 500

                                                                       
Query: 300 aatggcactcttcctgatctctttggataaaattccttttcctatgtactagtgtgacca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggcactcttcctgatctctttggataaaattccttttcctatgtactagtgtgacca 560

                                                      
Query: 360 gctacattagtgcccaggcccaactgctaacaaacatgttgac 402
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctacattagtgcccaggcccaactgctaacaaacatgttgac 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 803
Length adjustment: 9
Effective length of query: 393
Effective length of database: 794
Effective search space:   312042
Effective search space used:   312042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)