BAC Information

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BAC

Clone NameMSMg01-391J06
Chromosome17 (Build37)
Map Location 24,900,597 - 24,901,113
singlet/doubletsinglet
Overlap genenone
Upstream geneFlywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J06.T7 (MSMg01no391_j06.b1)MSMg01-391J06.TJ (MSMg01no391_j06.g1)
ACCAG493317AG493318
length732756
length of high quality
(start - end)		518 (40 - 557)342 (75 - 416)
definitionCHROMAT_FILE: MSMg01no391_j06.b1 PHD_FILE: MSMg01no391_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:51 2005CHROMAT_FILE: MSMg01no391_j06.g1 PHD_FILE: MSMg01no391_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTAAACGAATACTATAGTTCGAGAACCCGCGGAATTCACAG
AGATTTTCTTGCCTCTTCCTCCTATGTGCTGGGATTAAAGGCATGTGCCA
CCATTCCCAGCACCACTCAGACTTTTGAAAAGGAAGGAGGACGATATTTC
CACCATTTTGCTCACTTTGCTCTTTGCTTGCTTCAAGCAGAAAGGTCCAG
TTAAGTCCTTATCAGTCTATCATGTTTTTAAAAATATTTATTTATTTTTA
TGTATGAGTGCTCTATCTGCATATATACCTGCATGCCAGAAGAGAGCATC
AGATCACATTATAGATGTTTGCTGGAAATTGAATTCAGGACCTCTGGAAG
AGCAGCTAGTGCTTTTAACCACTGAGCCATCTCTCCAGCCCTTGTCATTC
CATCTTGGCCCACAATGGAAAGGAATGTGAGAGAGATAAATTACTATGTA
TGGGGTGTCTGTGTGCACACACACGCATTCTCATGTGCATGTGAGTGTGT
GTGCGCATGCGTGTGTAGGGACAGGCATAGAGGCAGTCACCTATGAGATA
TGTATGCAGGAAGATCAAGAGTTCAAAGACATTCTCAGCTACATAAATAG
TTTGAGGCTAGCATGGCTCCTTGAGACCCAGTCTCAACAGATGAACAAAT
CTTCCCCTAACAGACCAGAACCGAACCCCCGAAACAAAGCCCAGGATTTT
CTTCCCAGGCCTGTAGGCAAGGGCCCCTCCCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCTGCGAAAATCCAGGACAGCCAGGGCTACACAGAGA
AACCCTGTCACAAAAGCTGACTTAAAAATTTTTAAATTTAAAATTTAAAA
ATTTAAAAAGATAAATAAGTAAATAAGATAAATAAGATAAAAAGATTTAT
TTACTTATTTTATGTATATGATGAGTATAGTGTAGCTGTTTTAAGACATA
CCATATGGAAATTGAGCCAAGCGTGGTGGTGCACACCTTTAATCCCAGCA
CTCGGGAGGCAGAGGCAGGTGTTTTTTTGAGTTTGAGGCCAGCCTGGTCT
ACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTG
AAAAACCAAAAAAATACACCAAAAAAGGAAAGGGAATTGAACTCAGGACC
TCTGGAAGAGCAGTCGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCC
GTGTTTGTTCTCTTATGGTGCGGGTTAGAGTTGCATCCGAAGCCTGTGAG
CCACCTTGCCTTTCCTCCGTACAATTGTCTTTAGGTTCGCCCCCGGGTTA
CGTCTGTGTGCCCGGACGTCCCGCCCTCCCTCCGTCCTCGCCTTCCAGGC
CCCTTTTCTTGTTTCTGTGTGCCCCCACCCTTTTCGTTGCGGGGACCATT
TTCCGTGCTACCGTGCGCTTTTGTGCCCTTTGCATCGTGTAGGCCCTTCT
TCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j06.b1 MSMg01no391_j06.b1 CHROMAT_FILE:
MSMg01no391_j06.b1 PHD_FILE: MSMg01no391_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:51 2005
         (518 letters)



>mm_chr17_24900396_24901313
          Length = 918

 Score =  957 bits (495), Expect = 0.0
 Identities = 512/519 (98%), Gaps = 4/519 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcacagagatt--ttcttgcctcttcctcctatgtgctgggattaaaggcatgtgc 59
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcacagagattcatt--tgcctcttcctcctatgtgctgggattaaaggcatgtgc 259

                                                                       
Query: 60  caccattcccagcaccactcagacttttgaaaaggaaggaggacgatatttccaccattt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caccattcccagcaccactcagacttttgaaaaggaaggaggacgatatttccaccattt 319

                                                                       
Query: 120 tgctcactttgctctttgcttgcttcaagcagaaaggtccagttaagtccttatcagtct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgctcactttgctctttgcttgcttcaagcagaaaggtccagttaagtccttatcagtct 379

                                                                       
Query: 180 atcatgtttttaaaaatatttatttatttttatgtatgagtgctctatctgcatatatac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcatgtttttaaaaatatttatttatttttatgtatgagtgctctatctgcatatatac 439

                                                                       
Query: 240 ctgcatgccagaagagagcatcagatcacattatagatgtttgctggaaattgaattcag 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 ctgcatgccagaagagagcatcagatcacattatagatggttgctggaaattgaattcag 499

                                                                       
Query: 300 gacctctggaagagcagctagtgcttttaaccactgagccatctctccagcccttgtcat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacctctggaagagcagctagtgcttttaaccactgagccatctctccagcccttgtcat 559

                                                                       
Query: 360 tccatcttggcccacaatggaaaggaatgtgagagagataaattactatgtatggggtgt 419
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccatcttggccaaaaatggaaaggaatgtgagagagataaattactatgtatggggtgt 619

                                                                       
Query: 420 ctgtgtgcacacacacgcattctcatgtgcatgtgagtgtgtgtgcgcatgcgtgtgtag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgtgtgcacacacacgcattctcatgtgcatgtgagtgtgtgtgcgcatgcgtgtgtag 679

                                                  
Query: 480 ggacaggcatagaggcagtcacctatgagatatgtatgc 518
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggacaggcatagaggcagtcacctatgagatatgtatgc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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