BAC Information

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BAC

Clone NameMSMg01-392B08
Chromosome17 (Build37)
Map Location 31,445,457 - 31,445,697
singlet/doubletsinglet
Overlap geneSlc37a1
Upstream geneBtbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056
Downstream genePde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B08.T7 (MSMg01no392_b08.b1)MSMg01-392B08.TJ (MSMg01no392_b08.g1)
ACCAG493703AG493704
length753852
length of high quality
(start - end)
241 (82 - 322)206 (72 - 277)
definitionCHROMAT_FILE: MSMg01no392_b08.b1 PHD_FILE: MSMg01no392_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:30 2005CHROMAT_FILE: MSMg01no392_b08.g1 PHD_FILE: MSMg01no392_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAACAGCG
ACCGCGGAATTCACACTTACCTCCTGGCAGAGGCATATCACAGAAAGCAA
ACATCAGGCCACACCTACAAGGGGCCTCTGGGATCACTGAAGGCATGGGA
TCAAGCATAGTCAGGGAGCCTTGCTGGGGCTTCCGGGATTGATGCTAGGC
CTACATGGGTGGGGGAGGGACCACGTCCAGTACCAGGTAGAGGGCAGAGT
GTCACCACGGAGTCACTGCCTGTGGGACAGGAATGGTGAGTGAGGTGGGC
ATGGCCACTGGAGGGTCTCCAGTGTTGTACCTTGCCCTTGGACTCTGATG
AACACAGGTCAAGGTCACACTCTCCTTGCCTTAGGTATGCAGAAGTGACC
CTTGGGACCTCTAGGTTTTTTGAAGAGGAGCCTTAGTTTGAATCACAGTC
TCAGAGCCCATGGTTGAAAGGACTTGTGTTTGTTGTCAGGAGGAAGGGAG
CTCACCTTAATGTCTTCTACATTGGTCCCCTGGCTCCAGGCTCTTGTTTC
TTATTTAAGCTATGTATATGAGTATGCATGCGTATGCGGCTATATCTTCA
GACACACCAGAAAAGGGCATTAGATCCCCTTACCCATGGCTGTGACGCCC
CCTGTGCTTGCTGGGAATCGCACCTCGGAACCCCTGGCAAAACCGACCGG
GTTCTCTACCGCTGACCCCTCTCTCCCGGCCTCCCTTATCACCATTCCTC
CCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTCGCCCAATTCCTAGAAGTGACGCCCAAATACACAGGGGAAA
TCACTAAGCCACTTGATCAAAATTAATTGTTGCTGTAGGAAGAATAGTGT
TAGGGGGATGAAAAGACAGCCTGAAACCATGCTTCAGGCAGCCACATGCT
CAGGGGTAGTTTGCCAACACAAAACAGATTCCGTGTTTTGGTGTATGTGT
GTGTGTGTGTGTGAGTGTGTGCTTGCCTGTGCTGCATGCGTGACCGCGCG
TATGCCTGTGCGCCATTTTTCTATTTTCCGAACGCCCGCCCGCCTTCCCC
CGCCCTTTTTTTTCTCCCCCCCCCCTTCTGCCCTTGCTTCGCTTTCATTT
TCTTTACCCTACTTTCTCCCCCCCCCCTTCCCCCGCCTTTTCTTCTTCCC
CTCTCCTTTCTTTTCCTCTCCCCTTTCCCCCCTTTTCTCTTATCCGCCTC
CTTTTCTTCTTTTCTCCCCTTTTCTCCCCCTTTCCTCCGTTTTTTTCCCT
TTTTTTCCCCTTCCCTACCTTGTGTTCCCTTCGCGGACCCTCCGTTTTCT
TTTGCCCCTTTCGCTTTCTTCCCCCTTTTTTCTTTCTCCCTTCCCCCCTC
GCGCCCCCCCCTCCNCCTTTTCCCTCTTTTCCCTTTGTTCTTTTCCCTTT
TTTCTCCCCCCTCCTTTTCTTTGTCCCCCGTCCTCCCCCCTCCCTTCTTT
CCTCTTCTTTCCCTCCTTTCTTTCGCTCGCTCCTCTTCTGCTTTTCCGTT
TCTTGTCTCCTTCTTCCTAGTGTAATCTCCACTTTCTCATGGTTTCCCCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b08.b1 MSMg01no392_b08.b1 CHROMAT_FILE:
MSMg01no392_b08.b1 PHD_FILE: MSMg01no392_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:30 2005
         (241 letters)



>mm_chr17_31445257_31445897
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcatatcacagaaagcaaacatcaggccacacctacaaggggcctctgggatcactgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcatatcacagaaagcaaacatcaggccacacctacaaggggcctctgggatcactgaa 260

                                                                       
Query: 61  ggcatgggatcaagcatagtcagggagccttgctggggcttccgggattgatgctaggcc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ggcatgggatcaagcatagtcagggagccttgccggggcttccgggattgatgctaggcc 320

                                                                       
Query: 121 tacatgggtgggggagggaccacgtccagtaccaggtagagggcagagtgtcaccacgga 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatgggtgggcgagggaccacgtccagtaccaggtagagggcagagtgtcaccacgga 380

                                                                       
Query: 181 gtcactgcctgtgggacaggaatggtgagtgaggtgggcatggccactggagggtctcca 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcattgcctgtgggacaggaatggtgagtgaggtgggcatggccactggagggtctcca 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)