BAC Information

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BAC

Clone NameMSMg01-392C07
Chromosome17 (Build37)
Map Location 31,974,163 - 32,120,349
singlet/doubletdoublet
Overlap geneSnf1lk, Hsf2bp
Upstream geneDnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
Downstream geneRrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C07.T7 (MSMg01no392_c07.b1)MSMg01-392C07.TJ (MSMg01no392_c07.g1)
ACCAG493748AG493749
length757766
length of high quality
(start - end)		468 (52 - 519)382 (73 - 454)
definitionCHROMAT_FILE: MSMg01no392_c07.b1 PHD_FILE: MSMg01no392_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:34 2005CHROMAT_FILE: MSMg01no392_c07.g1 PHD_FILE: MSMg01no392_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,974,163 - 31,974,627)(32,119,968 - 32,120,349)
sequence
NACGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACACCTTGGGAGTCCTGGTGTCTCCATGCTAATCAGGA
ACTCCAGGATTTGGGCCTTTGTATTCCGAATCAAGTCACCACAAACACAG
CAGCTAGCCATCACAAAGATTTGTTCTTGTCGAGTTCTACAAGTCATGTC
AGAAAACCAAGCCTGCAGACGGCTGGGCTGAGCTCCTTCCATGGCTCTAG
GGAAGGGTCTGTTCTGCCTCCTCATTCATTTTCTGGCAGCCCACGGTGGT
CCTTGACTGGTATCAGAATCATTGCTATTTCGCCTCTACCTTCACCAGGC
TTCTCTCTACGAATCTGTTTACACAGTCACCCTCTTTCAAAGACATCGGA
TATACTAAGCTTAGTGGTCCCGGGCAGGGCTTGGAGCTAGGGAGGCTCCT
TAAGTTGAAAGGTCAGGAAAATCAGGAGTCTGACGTGCCCAGGGTCACTA
TCTCAGCCTGTCACAGAGCCTTGAGACCCACGAGTGCTCTCTGCCTGCCG
TGAACTCTTTCAAGGGCTTCTGTCTCAGCTTCTTTCTCCGTTAGGACAAC
CAGGAGGCTCACGTAGAATCCAGGAAGCCCGGAACCCCAGGGCCTGCTTT
TCTACTAAAGGAGAGGGGGGCCCACCCCCTTTGGCCCGCAGGAACCCCAT
GGCCCCTCCTTCTCTAAAAGAAACCTTTTTTGGATTCCCTGGTACACCTC
CCAACCC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTCTCGGATCTGTACAGTGGGAGTCC
ACCTCAGGCTCTTAGACCTAATACAGTAGGTGTCAGCTCTCTTCTTTATT
TCTGATCTAAGGATCTTGTACTTCAAGGGAAGCTTGTTTCCCTTTTTCTT
TGCTTGACCTAAGCAGTTGCTTCTGAGTTTTCAAACCCTGTGCTTCCGAG
ACCAGAACCAGTGGTTGCTGTGCCTATCTCTGGTAAGCTCATCTCATTCC
TTCTAAACTTTGCTAGACTTCATTTTCTTTCATTTGTTCATCTACATGGC
TGCCTTTTTCCCAGGCTGGGTCCAGATTCTTCACATTCCTCTTCAGCCGC
AGAACTGGCACAGAACTCTAGCAAATAGCTGATGAGGACAATGTGTATTG
GGGTGGTGACCACATGTTATGCAACCGCTAATGCAGACTAGCGTTAGAAT
CCCACTGTGGTCGTGGTGCTGCATTCCCTGGATAGACTACCGATGTGCGT
GTGGCACTCACACCTATCTTACATCTACTTGGCTTCTCCAGCGATCCTGA
AGAATGGCAACCCTACTACCTGGTGTTTTCTGCCGCACACCTTCTTCTCC
AGTTTCTAAACCCATATTCTCCCTCTGTCCCGACGAATTCCACCCGTCCT
CCCTCATTTCACATTTTCTCCTCCTCATTCCTTCACATCCAGACTCTCTC
ACCTTCTTTCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c07.b1 MSMg01no392_c07.b1 CHROMAT_FILE:
MSMg01no392_c07.b1 PHD_FILE: MSMg01no392_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:34 2005
         (468 letters)



>mm_chr17_31973960_31974827
          Length = 868

 Score =  845 bits (437), Expect = 0.0
 Identities = 458/465 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacaccttgggagtcctggtgtctccatgctaatcaggaactccaggatttgg 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacaccaagggagtcctggtgtctccatgctaatcaggaactccaggatttgg 263

                                                                       
Query: 64  gcctttgtattccgaatcaagtcaccacaaacacagcagctagccatcacaaagatttgt 123
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtctttgtattccgaatcaagtcaccacaaacacagcagctagccatcacaaagatttgt 323

                                                                       
Query: 124 tcttgtcgagttctacaagtcatgtcagaaaaccaagcctgcagacggctgggctgagct 183
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 324 tcttgtcgagttctacaagtcatgtcggaagaccaagcctgcagacggctgggctgagct 383

                                                                       
Query: 184 ccttccatggctctagggaagggtctgttctgcctcctcattcattttctggcagcccac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttccatggctctagggaagggtctgttctgcctcctcattcattttctggcagcccac 443

                                                                       
Query: 244 ggtggtccttgactggtatcagaatcattgctatttcgcctctaccttcaccaggcttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtggtccttgactggtatcagaatcattgctatttcgcctctaccttcaccaggcttct 503

                                                                       
Query: 304 ctctacgaatctgtttacacagtcaccctctttcaaagacatcggatatactaagcttag 363
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 504 ctctacgaatctgtttacacagtcaccctctttcaaagacatcggatagagtaagcttag 563

                                                                       
Query: 364 tggtcccgggcagggcttggagctagggaggctccttaagttgaaaggtcaggaaaatca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggtcccgggcagggcttggagctagggaggctccttaagttgaaaggtcaggaaaatca 623

                                                        
Query: 424 ggagtctgacgtgcccagggtcactatctcagcctgtcacagagc 468
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggagtctgacgtgcccagggtcactatctcagcctgtcacagagc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_c07.g1 MSMg01no392_c07.g1 CHROMAT_FILE:
MSMg01no392_c07.g1 PHD_FILE: MSMg01no392_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:35 2005
         (382 letters)



>mm_chr17_32119768_32120549
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctcggatctgtacagtgggagtccacctcaggctcttagacctaatacagtaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acttctcggatctgtacagtgggagtccacctcaggctcttagacctaatacagtaggtg 523

                                                                       
Query: 61  tcagctctcttctttatttctgatctaaggatcttgtacttcaagggaagcttgtttccc 120
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcagctctagtctttatttctgatctaaggatcttgtacttcaagggaagcttgtttccc 463

                                                                       
Query: 121 tttttctttgcttgacctaagcagttgcttctgagttttcaaaccctgtgcttccgagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttttctttgcttgacctaagcagttgcttctgagttttcaaaccctgtgcttccgagac 403

                                                                       
Query: 181 cagaaccagtggttgctgtgcctatctctggtaagctcatctcattccttctaaactttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cagaaccagtggttgctgtgcctatctctggtaagctcatctcattccttctaaactttg 343

                                                                       
Query: 241 ctagacttcattttctttcatttgttcatctacatggctgcctttttcccaggctgggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctagacttcattttctttcatttgttcatctacatggctgcctttttcccaggctgggtc 283

                                                                       
Query: 301 cagattcttcacattcctcttcagccgcagaactggcacagaactctagcaaatagctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cagattcttcacattcctcttcagccgcagaactggcacagaactctagcaaatagctga 223

                                 
Query: 361 tgaggacaatgtgtattggggt 382
           ||||||||||||||||||||||
Sbjct: 222 tgaggacaatgtgtattggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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