BAC Information

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BAC

Clone NameMSMg01-392N14
Chromosome17 (Build37)
Map Location 10,240,955 - 10,241,198
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392N14.T7 (MSMg01no392_n14.b1)MSMg01-392N14.TJ (MSMg01no392_n14.g1)
ACCAG494287AG494288
length791791
length of high quality
(start - end)
244 (75 - 318)53 (190 - 242)
definitionCHROMAT_FILE: MSMg01no392_n14.b1 PHD_FILE: MSMg01no392_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:31 2005CHROMAT_FILE: MSMg01no392_n14.g1 PHD_FILE: MSMg01no392_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACACCACGACC
GCGGAATTCTTCCCTTACAATCACATTCCTACAAATACTGACAGTTACAT
CCAGGCTGTATGACTCTCAAGTATGAGTTTCTAGTCCCTACCTCCACCTG
ACTCCACTTAGAAGCACGCTGTCCTTTAGCCCTGGGAGCCACTGTTCTGC
CATTGGGAAAATGAAAGGCAGATTTCTTTACTCTCTGCTTCATGTCTGCA
TTTCTGGCTCATTTCTCTCCTGCTCTGCCTGCTCTCATCCTGCTGATGCC
CACCACCTTCCAACACCACTGATTGTGTCTGATGGGCCCTTGGGATAGCC
ACTCTTACCTTTACTAGTAGCTACTTCCTTTGCCCTCTGTGTCCCTCCCA
CTATCCAGAACACACACACACACGCACACGCACACGCACACACTGCATCC
TTCCATTCTCATTCTTTCATGTATTGGAGAAAAACTCCCTGTACTTTGGT
TAAAGTTAAGCTGCGCCTTGGAAGGCGAGGGAAGCATACTTCCATATTCT
CTAATACATTTCTAGGCATTCCATATTTACAAAGGCTGTCCCCCACCGAT
GCTCCTGGGGTGTCAGTGTTTTGACATGATGTCCTAAATTTTGGGACCCA
GTCCTTGTTTTTTTTATAAAAGGGCGGTCAGGGATGAAGTAAACCCCCTC
CCTTTGCCGGCGGGGTGGAGACCCACCCTTTCTCCCCCTCTGCGGGGCCC
CCCCCCCCATTATAAAAACAATTATCGCCCACACCCCTCCC
ACACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGTAATTCATTAATGTAACTCTGGTCATATAATACTCA
ACTGGTGAGAATCATAAATTTGGAATTGTGTTTTTGGATTTGAGCAAAGA
ATATCTTTTCCTGCCTTAGGCACTGTCGACTGATAGTGAGCATTACTCAG
ATTGCTTAGGTTAGAACCTTATTTCCGCCTTGTATAGCATTGCGCTGAGG
TTTATATGAATTTTAAGTGTCCAGCACTTATAACTATGCGACGAATATGA
GCTTGTACTCCCAGGATATTGTTTTTTTCTTTCTGTTTTAAACTATACGC
TAGAGGCACTGTTTATGTCTCACGATATTACCCTTCTTATTTTACTTTTT
GCCTTCGACATTCCCCCCTGATCGCCCTGCTATCTCTATTTTGATTATAA
CCCGTCATTGCCATGATCTTTCTCTATTGTCCTCTATTCCTTATTCTTCA
CTTCCCTGGTACTCTTTCTCTCCCTCTCATTTCCTCCTGCCTATCTTCTT
CTTCCCCTTCTCCCATCCATTTTCCGCCCCCCTCCCTCTTCCCCTCCCTT
CACTTCCTTCCCCTTCTCACCTTTCTCTTTTCTCTTCTTCTCCCGTTTCT
ACCCCCCTCATTCCTCTATCCCCTTTTTCCCTAATCCTCTCCTTATTCCC
CTCCCCCCTTCCCTCTTTTCTACCCCTCTTCATATCCTCCCCCTCATTCT
TTCCCTTCCCTCTCGCTCTTTCCTTTCTTTTTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_n14.b1 MSMg01no392_n14.b1 CHROMAT_FILE:
MSMg01no392_n14.b1 PHD_FILE: MSMg01no392_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:31 2005
         (244 letters)



>mm_chr17_10240755_10241398
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctacaaatactgacagttacatccaggctgtatgactctcaagtatgagtttctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctacaaatactgacagttacatccaggctgtatgactctcaagtatgagtttctag 260

                                                                       
Query: 61  tccctacctccacctgactccacttagaagcacgctgtcctttagccctgggagccactg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctacgtccacctgactccacttagaagcacgctgtcctttagccctgggagccactg 320

                                                                       
Query: 121 ttctgccattgggaaaatgaaaggcagatttctttactctctgcttcatgtctgcatttc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgccatcgggaaaatgaaaggcagatttctttactctctgcttcatgtctgcatttc 380

                                                                       
Query: 181 tggctcatttctctcctgctctgcctgctctcatcctgctgatgcccaccaccttccaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tggctcatttctctcctgctctgcctgctctcatcctgctgatgcccaccacctcccaac 440

               
Query: 241 acca 244
           ||||
Sbjct: 441 acca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)