BAC Information

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BAC

Clone NameMSMg01-394A23
Chromosome17 (Build37)
Map Location 31,579,457 - 31,579,926
singlet/doubletsinglet
Overlap genePde9a
Upstream geneBtbd9, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
Downstream geneWdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394A23.T7 (MSMg01no394_a23.b1)MSMg01-394A23.TJ (MSMg01no394_a23.g1)
ACCAG495206AG495207
length787807
length of high quality
(start - end)		474 (49 - 522)398 (78 - 475)
definitionCHROMAT_FILE: MSMg01no394_a23.b1 PHD_FILE: MSMg01no394_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:18 2005CHROMAT_FILE: MSMg01no394_a23.g1 PHD_FILE: MSMg01no394_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTCTATAGTCTCTGAGTTTGGGGGCCATGAACAAATGCTT
AGCTGGGACATGAAGGTCTCCCCTTCCCAAGAGCACAGATAGAATCACTT
CAAAGGGTGATGTCATGACCGTCTGCAAGTCCCAGAACTGGGCTGGTCAG
GAAATAGGAAAGAGACAAGTTATGATCAGCCTGGGACCTGAACCTTGTAA
AACCAACCACCCAGCCCAGTTTTACAGGGCTAGCCAGAAGAGGCCAGGCC
TGCTCCACCCAGCCCGCTTCCTCTCTGCAGGCCCATCCTGAGAACACCAT
GTTTTCACTCACTGGTGCATTGACCCCACTCTGCCATGCTAATAGTCCCC
ATAAAACGAGCACCGTGAGAACGCTGCCCATATTTAGAGCCCCCGAAGCC
TGCCTGCCTTATCTAGCTGTAGCAGTGTCTGGAGAACATCAGCCCTGGGG
CCACTGGCCATGGACCAGGACAAGCAGGTAGCAGAGAAGAGGAGAAACCG
GTACCCAGGGAAGGCCTGCTACCTGTGATGGACAGTCCTAACATCTTTCC
ACAGTAGCACCTGTGGCTCACACAGGGATAGTATTACCCTTAACCCCCCT
GCCTGTCTCCCCGGTTGGCCCGGCCAGCCCCCAATTGGTTTCCCCCTCTT
CGGCCTGGTAGAACGAAAAAAAACTTATTCCTGGTGGTGGTTGGGCCCCA
GGGGGTGGGAAAAATTTTTTCTCGGGTACCGCCAGTN

NNNCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACGGATCATCTTGTGAAAACCCA
CACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACAT
AAGGGTTTTTATATGAGAAAAATAAAAGAATTAAGTCTGCTGATAAAAAA
AAAAAAAGAAAGAAAGAAAACACACACACACACAAACACACACACACACA
CAAAGAGTGATGTTCAGGTTTTGTGCAAATTGTTCCCCACCAACTCATGG
GTTTAAACGCTGTCTCCTGATGCTGCTGTTTCAGAAAGCTGTGAACCTTT
AGGAGGCAGAACCATAATAGAGAGAGTTGATCAGTTGATCACTGGAGACG
GACCTTGACAGTATGGCTTCTGGCTGAGCTCTTTGCTTTCTGTGTCCTCT
TGAGATCTGAGCTGCATGTTCCCAGTGCCATGAGGGACAATGTCCTCTCA
ATCCATGAGCCTTTGAGTTACTTTGGGAGGGTATCTATCAAAGCTTTCAG
AAAAGCCCCAAATAACCCGGGCGGTGGTGGCTGAAAGCCTTTAATCCCCG
GCCCCCCGGAGGGCAAGCCGGGGGGATTCTCGAACCCAAGCCCATCCCGG
CTTCAAAAAGGATTTTCTCGCAAGCCCCATGCCTTTTACAAAAAACCTTC
GCGGGATAAACCAAAAAAAGAACCCCCCCCCCCCCGCCGGGGTGGGCCTC
CCAATCCCCCCCTTTTCTTTTCGTGATATTTCCATTGCCACTTTTTATTT
CTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_a23.b1 MSMg01no394_a23.b1 CHROMAT_FILE:
MSMg01no394_a23.b1 PHD_FILE: MSMg01no394_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:18 2005
         (474 letters)



>mm_chr17_31579253_31580126
          Length = 874

 Score =  886 bits (458), Expect = 0.0
 Identities = 467/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttctatagtctctgagtttgggggccatgaacaaatgcttagctgggacatg 64
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcctttctagagtctctgagtttgggggccatgaacaaatgcttagctgggacacg 264

                                                                       
Query: 65  aaggtctccccttcccaagagcacagatagaatcacttcaaagggtgatgtcatgaccgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtctccccttcccaagagcacagatagaatcacttcaaagggtgatgtcatgaccgt 324

                                                                       
Query: 125 ctgcaagtcccagaactgggctggtcaggaaataggaaagagacaagttatgatcagcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcaagtcccagaactgggctggtcaggaaataggaaagagacaagttatgatcagcct 384

                                                                       
Query: 185 gggacctgaaccttgtaaaaccaaccacccagcccagttttacagggctagccagaagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggacctgaaccttgtaaaaccaaccacccagcccagttttacagggctagccagaagag 444

                                                                       
Query: 245 gccaggcctgctccacccagcccgcttcctctctgcaggcccatcctgagaacaccatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccaggcctgctccacccagcccgcttcctctctgcaggcccatcctgagaacaccatgt 504

                                                                       
Query: 305 tttcactcactggtgcattgaccccactctgccatgctaatagtccccataaaacgagca 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcactcactggcgcattgaccccactctgccatgctaatagtccccataaaacgagca 564

                                                                       
Query: 365 ccgtgagaacgctgcccatatttagagcccccgaagcctgcctgccttatctagctgtag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccgtgagaacgctgcccatatttagagcccccgaagcctgcctgccttatctagctgtag 624

                                                             
Query: 425 cagtgtctggagaacatcagccctggggccactggccatggaccaggaca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgtctggagaacatcagccctggggccactggccatggaccaggaca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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