Query= MSMg01no394_k20.b1 MSMg01no394_k20.b1 CHROMAT_FILE:
MSMg01no394_k20.b1 PHD_FILE: MSMg01no394_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:08 2005
(404 letters)
>mm_chr17_81241358_81242161
Length = 804
Score = 700 bits (362), Expect = 0.0
Identities = 392/402 (97%)
Strand = Plus / Plus
Query: 1 ttcattgtattcattctccgtgtccacctctccccggatcctcctccacctatctttgtt 60
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattgtattcattctccttgcccacctctccccggatcctcctccacctatctttgtt 260
Query: 61 tggcaaaagtcaccggcactaatagagccagccgtcccaatccataggtcacacgttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaaaagtcaccggcactaatagagccagccgtcccaatccataggtcacacgttctc 320
Query: 121 cggtctgcacaaagccttattttagcaatcaaaatggaatcccaagtctttaccttggca 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtccacacaaagccttattttagcaatcaaaatggaatcccaagtctttaccttggca 380
Query: 181 gatgttttcttcaaagtcatcatgggtagtcaggcaagcagctgctttaccactgtatgt 240
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct: 381 gatgttttcttcaaagtcaccatgggtagtcaggcaagcagctgctttatcagtgtatgt 440
Query: 241 accatgaattgcaagtgccccatcagctaatgatacccaggcatcacttcaaactcaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatgaattgcaagtgccccatcagctaatgatacccaggcatcacttcaaactcaagt 500
Query: 301 aggtcacacagccaatataaggacacagtgtctttgaagtttgtttgtttgcaattacgt 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 501 aggtcacacagccaatataaggacacagtgtcgttgaagtttgtttgtttgcaattacat 560
Query: 361 ctgctctagttttgtttattggtcagacttccttagttgcag 402
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgctctagttttgtttattggtcagacttccttagttgcag 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_k20.g1 MSMg01no394_k20.g1 CHROMAT_FILE:
MSMg01no394_k20.g1 PHD_FILE: MSMg01no394_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:09 2005
(437 letters)
>mm_chr17_81392071_81392908
Length = 838
Score = 824 bits (426), Expect = 0.0
Identities = 432/434 (99%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 2 aaacacacttagtccccagggttttagataatgtattaagggcctgtggtttaggactgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaacacacttagtccccagggttttagataatgtattaagggcctgtggtttaggactgc 576
Query: 62 agttgatggatagcctagatcattccaggataagacctacttcagcaggctccttttatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agttgatggatagcctagatcattccaggataagacctacttcagcaggctccttttatt 516
Query: 122 tagatgcattgaagcaaaggaagggctgggccaggatggatgctaactgctcctgatgct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tagatgcattgaagcaaaggaagggctgggccaggatggatgctaactgctcctgatgct 456
Query: 182 ttgagggggctgcctggacgctgtctcttcctctgctgtcaggagagtatcacaccctat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgagggggctgcctggacgctgtctcttcctctgctgtcaggagagtatcacaccctat 396
Query: 242 gtgtgctctcccagaaggcttcagcccatgaaaaataatggatacggttggtagcgagat 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 395 gtgtgctctcccagaaggcttcagcccatgaaaaacaatggatacggttggtagcgagat 336
Query: 302 ctgcaccaagggaggagaattgaatacaaactttattcta-ttttttttgagatttctgg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 335 ctgcaccaagggaggagaattgaatacaaactttattctatttttttttgagatttctgg 276
Query: 361 aatattaaaaaaaaattagttaagtgccaaggagtcgtttcagcagataaaggcacttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatattaaaaaaaaattagttaagtgccaaggagtcgtttcagcagataaaggcacttac 216
Query: 421 gaagcttgagctta 434
||||||||||||||
Sbjct: 215 gaagcttgagctta 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space: 354812
Effective search space used: 354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
