BAC Information

Click to search

BAC

Clone NameMSMg01-395B06
Chromosome17 (Build37)
Map Location 91,595,932 - 91,596,401
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872
Downstream geneLOC627235, LOC100043741, LOC100043742, EG640442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395B06.T7 (MSMg01no395_b06.b1)MSMg01-395B06.TJ (MSMg01no395_b06.g1)
ACCAG495982AG495983
length768760
length of high quality
(start - end)
475 (50 - 524)482 (80 - 561)
definitionCHROMAT_FILE: MSMg01no395_b06.b1 PHD_FILE: MSMg01no395_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:48 2005CHROMAT_FILE: MSMg01no395_b06.g1 PHD_FILE: MSMg01no395_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCCCTTTCATTGCCAAGTTGCTGTTCAGTGAAGCCTGACCAG
TAGCTTAACAAAGGGAAGCCATGGCTACTCTTCAATAAGTCACAGACAAA
AACATGGGCATGTGTTTCTACCTTCATGGCCAAGGAAAGCTGTGAAGAGG
CTTGTGCCAGTGGTTAGGCAGCATCAGCACCCAACACTGGTATGCCGGTG
CTTTTGGACTGTCTAGGAGATGGAGAACTCAGGGTAGCCAAGAACAGAAA
CAGATACAAAAGGCAAGCTTGGAAACCTGAGACAACACTGAGATAGGATA
TGTCTTTGGGATCTGAAGAAGGAGCAGAGAAAAAGAAAGAAAAACTTGCA
TTCTTTATTCTTGGTGAATTTTAAACCCTAGTTTGGGGTCCTGATGTCAA
CAAGTATTTCTACAGTTGCTGTGACAATCCTGTTTTTGCTCTCCTTGCTA
CTGTCTCTGATGGTTCCTAGCTCCTACTGTGCATGCATCTCATTAGTTGC
TCAAAAATTTTATTTTCTTTATTAGACCCTGATGCAAAATAAACGTCTTT
CAAACCTGGGTTTATGGTTTCTAACACGTAAGCTTGCCCCGACAAGTCTA
AACATCTTATAAACAACGCATCTAAATTTAACCTTATCCCAAAAGGCAAA
ATCTTTTACCATATTACTTTATAAACACAGAACAAAGGCCTACCCTTTAT
CTTTTCTGATAAACCAAG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAAAGG
ATGGATCTATAAAATATAATCCTGAGTGAGGTAACCCAATCACAAAAGAA
CACACATGGTATGTACTCACTGATAAGTGGAAATTAGCCCAAAAACTTGG
AATACCCAAGATACAATTCAGAGACCACATGAAGCTCAAGAAGAAGGAAC
ACCAAGTGGATACTTTGGTCCTTCTTAGAAAGGGGACCAAAATACCCATG
GAAGAAGGTACAGAGACAACGTGTGGAGCAGAGACTGAAGAAAGGCCATC
CAGAGACTGCCCCAAGTGGGGATCCTTCCCAGATATAGTTTCCAAACCCA
GACACTATTGTGGATGCCAACAATTGCTTGCAGATAGGAGCCTGATATAG
CTGTCTTATGAGAGGCTCTTCCCATGACTGACAATTACAGAGGTGGATGC
TTGCAGTCAACCACTGTACTGAGCACCAGGTCCACAATGGATGAGCTAGA
GAAATGACCCAAGGTCATAAAGGAGTTTGCAGCCCCATAGGAGGAACCAA
AATTTGAAGCATCCCGAATCCCCCGAACTCCCAGGTACTAAACTTGAACC
CAAAAGACTCATGGAGGGAATCATGGGCCCCGCTCGCCATGAAACACAAG
AGGGCCTTGGGTGTTTTCTAGGGAGGAGAAGATCCCCGGTCTTGCGAAAG
CCTAAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_b06.b1 MSMg01no395_b06.b1 CHROMAT_FILE:
MSMg01no395_b06.b1 PHD_FILE: MSMg01no395_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:48 2005
         (475 letters)



>mm_chr17_91595727_91596601
          Length = 875

 Score =  816 bits (422), Expect = 0.0
 Identities = 458/470 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccctttcattgccaagttgctgttcagtgaagcctgaccagtagcttaacaaagg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccctttcattgccaagttgctgttcagtgaagcctgaccagtagcttaacaaagg 265

                                                                       
Query: 66  gaagccatggctactcttcaataagtcacagacaaaaacatgggcatgtgtttctacctt 125
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaagccatggctactcgtcaataagtcacagacaaaaacatgggcatgtgtttctacctt 325

                                                                       
Query: 126 catggccaaggaaagctgtgaagaggcttgtgccagtggttaggcagcatcagcacccaa 185
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatggccaaggaaagctgtgaagaggcttgtgccagtggttaggcagcatcagcacccaa 385

                                                                       
Query: 186 cactggtatgccggtgcttttggactgtctaggagatggagaactcagggtagccaagaa 245
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 cactggtatgccggtgcttttggactgtctaggagatggagagctcagggtagccaagaa 445

                                                                       
Query: 246 cagaaacagatacaaaaggcaagcttggaaacctgagacaacactgagataggatatgtc 305
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 446 cagaaacagatacaaaaggcaagcttggaaacctgagacaacgctgagataggatatttc 505

                                                                       
Query: 306 tttgggatctgaagaaggagcagagaaaaagaaagaaaaacttgcattctttattcttgg 365
           |||||| |||||||||||| ||||||||||||||||||| |||||||||||| | |||||
Sbjct: 506 tttggggtctgaagaaggaacagagaaaaagaaagaaaagcttgcattctttgtacttgg 565

                                                                       
Query: 366 tgaattttaaaccctagtttggggtcctgatgtcaacaagtatttctacagttgctgtga 425
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgaattttaagccctagtttgggctcctgatgtcaacaagtatttctacagttgctgtga 625

                                                             
Query: 426 caatcctgtttttgctctccttgctactgtctctgatggttcctagctcc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caatcctgtttttgctctccttgctactgtctctgatggttcctagctcc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)