NCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCACTCTCTACATACTTACTAAGTGATTAGTATATCCCAGGAT
ATCTTTGATAGTGGAAATGTTATATCTTATCATCTTTTATAGACAAGACC
CCAAAGAAGATAAGAGCCAGAGAGAACAAGCCAGGGAAGCTGGGACTGAG
ACATCATCTAAAGTCATGTAGGTAGCAACTGATATCAATATTTCACATAG
CTCTGCCATCTCTCTACCACTTCTCAACACTAGCCTTCATTACCCTCTCA
CAACTCTACCAAGGGGACAAAACACTAAAACCTGCGAAGTTCTAGCTTAG
TGACCCAGGCCTGTAAATCCACCTTCTGAAATGGAAGAAAAAAATCAAAG
TGATGTAAAGAGACTTTATTTAATATGAAAAAAATTTTAATTAATAACAA
TTTCATCTTATCCTTAACTCTCATAGAGCTTAAACTGCACTGCATATTTT
GAGGCAATGTGGAAGATCTCTTATCAAGCAGAGAGTATTTTGTATTTTCA
GCCATGTATAACAAACACAGTATCAAAATGGTGTTGATGAAGAAGCCGAA
AGTAGACTTTGTTATGGTTTTGAATTGGGGGAGGTGGCCAAAGGTGGAAC
CCCTTTCTGGTTTTCGGGTGCTTCTACGGTTTTGGGGAACAAATTCCCCG
CGCGGTCCCTCCTTTTTTCACTCGGACTTATTAGGGCCTTTGGATATGTC
CCACCCCTGCAAATTATTTATTTTTTT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTGCCTATTCAGTGAC
ATTCAGAATTGCTTCTGGTATTACACTATCACTTAGAATAAAAGCCAAGT
TGCTCCCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGT
GGTTTTAGAATATTGTATTATTCATGAGATGGTTAGCTAGAACAGAACTC
CCTAATTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGTGTAAAG
ACCTCACACCTGGCTTCTGTGTTTATAGCTGACCTTAGATAGGGCTGACT
TTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAGTCTTTGTGTTTACAT
TCCTCTGTTTTGTGTAAGGGTCATTAAGCATCCGGTAACCTCATTTGTAC
CTTGCCAATGTGTCACCTAACTTCCCCATTTTCTTCTGTATAAAAAGTTT
GATGCTCATTTTGACAAATTACATTCAGATTCTATACAATCTCATGTGGT
GATCTGCCGGTCACTTGTTGACCCCCTGCCCTTCCGAACCCAAAGACTTA
TTTTTTGCATAAAAAGGGTACCTCTAGGTTTTGTGTGACTTTATTTTCAT
GCTTTTTTTTTTCATAGGCCCTCTGATCCCCTCTTCCTTTTTACCTTAAT
ACCATGTTTTTTTCTTGTTCCTCTTCTCCTTTGCGTTATCTTCTCCGCTT
CCTCCTTTCCTTTCACTTCCCGTATTTTTTTGCTTTTCCTT

Query= MSMg01no395_e18.b1 MSMg01no395_e18.b1 CHROMAT_FILE:
MSMg01no395_e18.b1 PHD_FILE: MSMg01no395_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:06 2005
         (480 letters)



>mm_chr17_51574201_51575080
          Length = 880

 Score =  745 bits (385), Expect = 0.0
 Identities = 452/481 (93%), Gaps = 15/481 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcactctctacatacttactaagtgattagtatatcccaggatatctttgat 64
           ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 476 gaattcattcactcagtacaaacttactaagtgattagtatatcccaggatatctttgag 417

                                                                       
Query: 65  agtggaaatgttatatcttatcatcttttatagacaagaccccaaagaagataagagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agtggaaatgttatatcttatcatcttttatagacaagaccccaaagaagataagagcca 357

                                                                       
Query: 125 gagagaacaagccagggaagctgggactgagacatcatctaaagtcatgtaggtagcaac 184
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 356 gagagaacgagccagggaagctgggactgagacgtcatctaaagtcatgtaggtagcaac 297

                                                                       
Query: 185 tgatatcaatatttcacatagctctgccatctctctaccacttctcaacactagccttca 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296 tgatatcaatatttcacatagctctgccatctcactaccacttctcaacactagccttca 237

                                                                       
Query: 245 ttaccctctcacaactctaccaaggggacaaa-------acactaaaacctgcgaagttc 297
           |||||||||||||||||| |||||||||||||       |||||||||||||| ||||||
Sbjct: 236 ttaccctctcacaactcttccaaggggacaaaggataaaacactaaaacctgcaaagttc 177

                                                                       
Query: 298 tagcttagtgacccaggcctgtaaatccaccttctgaaatggaagaaaaaaa--tcaaag 355
           ||||||||||||||||||||||||  ||||||||| ||||||||||||||||  ||||||
Sbjct: 176 tagcttagtgacccaggcctgtaaggccaccttctaaaatggaagaaaaaaaaatcaaag 117

                                                                       
Query: 356 tgatgtaaagagactttatttaatatgaaaaaaa-ttttaattaataacaatttcatctt 414
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 116 tgatgtaaagagactttatttaatatgaaaaaatgttttaattaataacaatttcatctt 57

                                                                       
Query: 415 atccttaactctcatagagcttaaactgcactgcatattttgaggcaatgtggaagatct 474
           |||||||||||||||||||||||||||||||| |||    |||||||||||||| |||||
Sbjct: 56  atccttaactctcatagagcttaaactgcactacat----tgaggcaatgtgga-gatct 2

            
Query: 475 c 475
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)