BAC Information

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BAC

Clone NameMSMg01-395I10
Chromosome17 (Build37)
Map Location 83,064,327 - 83,064,559
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I10.T7 (MSMg01no395_i10.b1)MSMg01-395I10.TJ (MSMg01no395_i10.g1)
ACCAG496323AG496324
length791778
length of high quality
(start - end)
47 (132 - 178)238 (82 - 319)
definitionCHROMAT_FILE: MSMg01no395_i10.b1 PHD_FILE: MSMg01no395_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:24 2005CHROMAT_FILE: MSMg01no395_i10.g1 PHD_FILE: MSMg01no395_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTACTATTTGTCGGCGATATACGACTATTATTTCAAACAAATCAGCG
AGAATCGGTTGTTACACAAAAGACACAGCAGCAGAGATCAGATCCTTCTT
CAAGCTCCTCCCAAATTTCACCCCAATGGTCTCAGGTTGACCTACCATTA
CTGGCTGCTAGGTGATATTTACTGGGCAGATAACACTCAGATGCCTGATA
GCACGTGACCCTGCACAAATGCATCTTTTGTACATTTTTTTCCTCTATTT
AACTTATACCGAATGACTTCAGCATCTACCATTTGTGAATAAGACTAGAC
ACTAATCACAGACACTTTTTTTTTTCATTATGTAATAACTGATTGTTGTT
CAATAATTTTTTTTATTTCCCCCCCCACCGGCACTACATATATTTTTCTC
CTTGTATTTTTACCCCTTTAATACACACCCTAATATTTTCTTCATTCCTT
TCATCCCCACCATTTTTGCCCTACCCCGCCGAATACTTTTGTGTTTATCT
TTTCCTTCCCCCCCACCTTGTTTTATGCAACCTCTTTAAATTTTACCCTC
CTCCCCATTATTTTACTCCCTTTTTTACACTCCCCCTCTTCTCTTTTTTC
ACCCCCCCACTTTTTCCTTTACCCCCTTTTGTCCCTTCTTCCTTTTCTCT
TTCCTCGTCCCCTTTTTCTCTTATCTTCCCCCCCTTTTTCTCCCCATGCA
TCCCTTCCTTTTTCCCCCTTCCCCCCCCTATTTCCCTCCCCCATCCCTTT
TTTCCTGTTTTTTGTCTCCCGCTTTTTTTACCCCATTTATT
CACGATGATGCGCGTAGGCGGGNGGNCGCCNTTTTCAAAAXXXXXXXXXX
XXXXXXXXXXXTTTCCCAACAAACAATCTCACACTTGGGTACCAACATCC
CATACTAAAACACCCATAATAGACAGAAACTAAATGCATGGTCCCTTTCC
CAAGTACACAGCATTATCCTTTAAGAGCCGGCTAATGCAGCCTTCTGAAT
ATTTTCATCCTCTTACTTTAATTAACTTTAAAAATATTAATAGATAAGTT
AATGAGCACATTGGGAAATTTTCTAAAAAGCTGTAAGTGTGGAGAATAAC
ATTATGGCAGCCCGAGTATTCTTAGTTATGGAGTGTGGTTACACATGTTA
AGCGTAGCTAATGTTATTTCCCTTACCGATTAGTATCAAGGCTGGTGGTT
TACTGTATTTCATGGTCCCGGATTATTCTAACTGATCAACTTAACAGAGC
AAACATAGCTAATCACACAGGGTTAAAGTTGTTTTCTTAATTGAAGATAA
TATTATCTATGTACCGATGGCACTGCGTTTATGCTCTATTCCCAAATCCT
GCTTTTCCCAATTCTAAACCTTTCTGAACTGAGCATTTTCTACCCTCCCC
TCGCCTCCCAGAAAATATTCCCTACCTTTCATCACCCGATTTACATAATC
CTTTTTTTTTTTTTTTTATTCTTGAAATAAAAACCTTACTTTTTAACTTA
TCCAAATATTGTTTAAGAGTTTTTTTATCCATTCCTCCGTTCTCCTTCTG
TACCCCCTATCATTTACACTATCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i10.g1 MSMg01no395_i10.g1 CHROMAT_FILE:
MSMg01no395_i10.g1 PHD_FILE: MSMg01no395_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:24 2005
         (238 letters)



>mm_chr17_83064127_83064762
          Length = 636

 Score =  400 bits (207), Expect = e-116
 Identities = 228/235 (97%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttgggtaccaacatcccatactaaaacacccataatagacagaaactaaatgcatgg 60
           |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 433 cacttgggtaccaatatcccatactaaaacacccataaaagaaagaaactaaatgcatgg 374

                                                                       
Query: 61  tccctttcccaagtacacagcattatcctttaagagccggctaatgcagccttctgaata 120
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 373 tccctttcccaagtacacagca-gatcctttaagagccggctaatgcagccttctgaata 315

                                                                       
Query: 121 ttttcatcctcttactttaattaactttaaaaatattaatagataagttaatgagcacat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 314 ttttcatcctcttactttaattaactttaaaaatattaatagataagttaatgaccacat 255

                                                                  
Query: 181 tgggaaattttctaaaaagctgtaagtgtggagaataacattatggcagcccgag 235
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgg-aaattttctaaaaagctgtaagtgtggagaataacattatggcagcccgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 636
Length adjustment: 9
Effective length of query: 229
Effective length of database: 627
Effective search space:   143583
Effective search space used:   143583
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)