Query= MSMg01no397_p11.b1 MSMg01no397_p11.b1 CHROMAT_FILE:
MSMg01no397_p11.b1 PHD_FILE: MSMg01no397_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:34 2005
(247 letters)
>mm_chr17_77725829_77726474
Length = 646
Score = 429 bits (222), Expect = e-125
Identities = 240/246 (97%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 cactagaagatatgaatataaaatatgctttcaacttattatttgtaaaaaatctttttt 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 cactagaagatatgaatataaaatatgctttcaacttattatttg-caaaaatctttttt 387
Query: 61 tctacccttaatctttggtctatgtaacattattcacacacatttgggtaatacagtctg 120
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 386 tctacccttaatctttggtctatgtaacattattcacaaacatttggataataaagtctg 327
Query: 121 tgtgataagaatattcattatggtctttagagattaaaaagttgagtttcatttagattt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtgataagaatattcattatggactttagagattaaaaagttgagtttcatttagattt 267
Query: 181 taaggaatcatttaaatggtagacaataaagtgcatctttttcaattgttgaaatgtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taaggaatcatttaaatggtagacaataaagtgcatctttttcaattgttgaaatgtaac 207
Query: 241 attgat 246
||||||
Sbjct: 206 attgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no397_p11.g1 MSMg01no397_p11.g1 CHROMAT_FILE:
MSMg01no397_p11.g1 PHD_FILE: MSMg01no397_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:34 2005
(416 letters)
>mm_chr17_77514148_77514961
Length = 814
Score = 746 bits (386), Expect = 0.0
Identities = 402/408 (98%), Gaps = 2/408 (0%)
Strand = Plus / Plus
Query: 8 acattccttgttttctcaggaggaggttgcatgactggcacctaaaatgttgtaagcccc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 acattccttgttttctcaggaggaggttgcatgactggcacctaaaatgttgtaagcccc 267
Query: 68 tctctggaatatacacagaaggccatattctcttcctttccttaaataatcctagagtaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctctggaatatacacagaaggccatattctcttcctttccttaaataatcctagagtaa 327
Query: 128 atatctgccacagaaaccaaacgaaatctgtctgtttgatctgatgttaattttcaaaat 187
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acatctgctacagaaaccaaacgaaatctgtctgtttgatctgatgttaattttcaaaat 387
Query: 188 tagatataatggcaacaacatgtaactcagtcaattcatccatgtttgtttgaacaatat 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagatataatggcaacaacatgtaactcagtcaattcatccatgtttgtttgaacaataa 447
Query: 248 tatctactcctctctaaaacaaatctatgtgatgcccacacacacacacactccattaag 307
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 448 tatctactcctctctaaaacaaatctatgtgatgcccacacacacacac--tccattaag 505
Query: 308 cttctcttatccaaaccctacccgcaaatattattaacagcgattcaggtttagaaaaaa 367
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 cttctcttatccaaaccctacccgcaaatattattaatagcgattcaggtttagaaaaaa 565
Query: 368 atagctaatatttagaatggataactcatgaaattccttatatgctac 415
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atagctaatatttagaatggataactcatgaaattccttatatgctac 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 814
Length adjustment: 9
Effective length of query: 407
Effective length of database: 805
Effective search space: 327635
Effective search space used: 327635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
