BAC Information

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BAC

Clone NameMSMg01-398F15
Chromosome17 (Build37)
Map Location 35,900,329 - 35,900,551
singlet/doubletsinglet
Overlap genenone
Upstream geneSkiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398F15.T7 (MSMg01no398_f15.b1)MSMg01-398F15.TJ (MSMg01no398_f15.g1)
ACCAG498473AG498474
length768743
length of high quality
(start - end)
408 (70 - 477)223 (324 - 546)
definitionCHROMAT_FILE: MSMg01no398_f15.b1 PHD_FILE: MSMg01no398_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:03 2005CHROMAT_FILE: MSMg01no398_f15.g1 PHD_FILE: MSMg01no398_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCATCTCTCTTGGAGTAGCCGGAGTTGGTATTTGAGTCACA
GTCCTTTTTCTAGCCTCTGTCAGCCACCGTTTTTCATCCCGGAGGGTATA
TCTCAGGTAGACCACTTCCATCTGACATAGCTGGGCTTTTTTAGCAGAGG
CCCGGTAACCCAACTCACCCAGTTCTGCTAGCAATCTCTTGGTCCCCTGC
CAGCATTCTCTTCCATGGTTGCAGCAAGGAGCAACATATTGAAGCAGAGT
TACCTGGGAGTTTTCAGTTCTATAAGGAGGCTAAATCTCGATGTAGAGCC
TCATTTAAAAGGGTGGGGGAGTTTTTGAACTCCTGGGGTAACCACATCCA
GGTCAATTGTCCTGTTTGTCCAGTGTCAGGATCTCTCCACTCAAAGACGA
ATATGGGCTGGCTGGAGGGATGTAACTTTAGGCAAAAGAAAGCATCTTTT
AAATCAAGTACTGTATACCATTTTCGCTCCCGGAGGAGTGAGCTGAGGAG
GGTATAGGGATTAGGAACAGTTGGGGGAATATCTTGGACCCTCTTATGGA
CCCCCCTCAGGCCTTGTACTGGGCAGAAATCACTCGTGCCCTGGTTTTTT
TTCCGAAGGTTAAGGGATATTCCCTGGTGGGATCGGCCAGGGACCCAAAA
AACCTAATTGGGAAATAACCTCCGAAATATGGGGCCCGGGATCCCACCTC
TTGGGTTTAAGGGTCTCT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACAGAAGAATTCAAGGCAGGATGGCCGACCAGGTGA
AGCCTCGTCTCAAAAAACGAAGCCAGGGGTCTTGCTCAATCCGTAGAGTA
TTTCCTTAGCTTGCCCACAGACCCAAGTTTGCTTTTCCCCACTCCCATGC
ACAGAATAAACTGGGCCTGGTGCCCAGTTACTAACATCAGCACTCAGGAT
GTAGGGGCAAGAGAACCAGGGGCTCAAGGCCATCCTTAGTACACAGTGAG
TCTGAGGTCAGCCTGTGTTGCATGAGATCATCTCAAAAAACCAAACAAAC
AAACAAAAAAACCTACTCCAAACCAAACAAGGGGGCTAAATGCTATACGG
CCACCAGTTCTGTCCCCTCTGGAATAACTGTAAACTGGTATACATGCCGC
CCCTGCCTCTGCTTGCCTTTCTCTCTTTGGGGGGAGGGTGGGACGGGGTC
AGGGGCTGGCCTGGAGCTCATGGCTATCTGCCTGCTGGGATTAAGGGCAT
GTGGTAAGACTGGCAATTCTGTCTGTTTTCCCAGGCTGGCCTCATCCAAT
CCTCTCAGCCTCAGCCTCCCGGGAAGCCAGGATGGCACCTTATTTTTTTT
GTTACTTCCTTTCAAAACCCAACAACCCTTTCTTCGTGCTCCATTGGTTT
CCCTTTCCTAAAACCCCTACTCACTTATTTTTTTTCCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_f15.g1 MSMg01no398_f15.g1 CHROMAT_FILE:
MSMg01no398_f15.g1 PHD_FILE: MSMg01no398_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:03 2005
         (223 letters)



>mm_chr17_35900129_35900751
          Length = 623

 Score =  393 bits (203), Expect = e-114
 Identities = 218/223 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatcatctcaaaaaaccaaacaaacaaacaaaaaaacctactccaaaccaaacaaggg 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gagatcatctcaaaaaaccaaccaaacaaacaaaaaaacctactccaaaccaaataaggg 260

                                                                       
Query: 61  ggctaaatgctatacggccaccagttctgtcccctctggaataactgtaaactggtatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctaaatgctatacggccaccagttctgtcccctctggaataactgtaaactggtatac 320

                                                                       
Query: 121 atgccgcccctgcctctgcttgcctttctctctttggggggagggtgggacggggtcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 321 atgccgcccctgcctctgcttgcctttctctctttggggggagggtgggactgggtcaga 380

                                                      
Query: 181 ggctggcctggagctcatggctatctgcctgctgggattaagg 223
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctggcctggagctcatggctatctgcctgctgggattaagg 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)