BAC Information

Click to search

BAC

Clone NameMSMg01-398H13
Chromosome17 (Build37)
Map Location 53,019,614 - 53,019,854
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398H13.T7 (MSMg01no398_h13.b1)MSMg01-398H13.TJ (MSMg01no398_h13.g1)
ACCAG498565AG498566
length758739
length of high quality
(start - end)
540 (71 - 610)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no398_h13.b1 PHD_FILE: MSMg01no398_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:12 2005CHROMAT_FILE: MSMg01no398_h13.g1 PHD_FILE: MSMg01no398_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGTACCATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCTTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCCCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGCACTACTGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATATGGTACACCTACACAAA
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATTTGTACTCACTGATAAGTGGATATTAGCCCCCAAT
CTAGGATATCCCAGATATAAGAAACAATTTGCTAAACACCTGAAACTCCA
GAAGAATGAAGACTGAAGGGTGCACTCTTTATAATTGGGAAACAAACACC
CCTGGAAN
NNAAGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCTAAAAAGCTACAATT
TGCCAGAACACACAGGAGCTGCTTCCCACCCAGTGTTATGACTTACGTAA
TTCCCAAGCTCCTCAATGGCCCATTTTTCTGCCTAACAAAATGACAAGCA
CTTTGCAAGTAAGCACATCTATACTTATTTGATGTGGCCCATGCTTCTTT
GTTTCTTTGTCTCCTGGTGGAAATGTTGTGAGATGTTCAATGCAAAAGCC
TGCCAATTTGGCCATTTGATTTTTTTCCTAGACAACTAGGCATACTCTGT
TGATCCACCTGCATATTAAGTAAGCCCTGACCAGAAACTGTCAAAGCATC
ATCTAATCCCTGCTCCTTGATGAACATGGGCCATCTTATTGGTCACGACC
CCAAAATATATGAGATACAATTTAATAATGCCACTTTGTTAATCCTTTGC
TTAATATATTTTGAACAAATTCCCTGTTGTAAAAGCAGTGTGTAACTGGC
ATCAGGACTTGAGGTGACCCAACCGCTGGTGGAAACAGCTGCAACTTTGC
TCTCATGCTAAATGACCTAAGCGGCTTGCATTTCCTTAAGCTTTCCATTT
GTATTTGGGGGAATAACCTTATATTATTGGGAGATTTACCCAAACCTAAC
AAAATGTAGGGTTAATTTTAGCACCTGCTAATTATCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_h13.g1 MSMg01no398_h13.g1 CHROMAT_FILE:
MSMg01no398_h13.g1 PHD_FILE: MSMg01no398_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:12 2005
         (241 letters)



>mm_chr17_53019414_53020054
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttctaaaaagctacaatttgccagaacacacaggagctgcttcccacccagtgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttctaaaaagctacaatttgccagaacacacaggagctgcttcccacccagtgtta 260

                                                                       
Query: 61  tgacttacgtaattcccaagctcctcaatggcccatttttctgcctaacaaaatgacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttacgtaattcccaagctcctcaatggcccatttttctgcctaacaaaatgacaag 320

                                                                       
Query: 121 cactttgcaagtaagcacatctatacttatttgatgtggcccatgcttctttgtttcttt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cactttgcaagtaagcacatctatacttatttaatgtggcccatgcttctttgtttcttt 380

                                                                       
Query: 181 gtctcctggtggaaatgttgtgagatgttcaatgcaaaagcctgccaatttggccatttg 240
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 381 gtctcctggtggaaatgttgtgagatgttcaatgcaaaagcatgcccatttggccatttg 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)