Query= MSMg01no398_j24.b1 MSMg01no398_j24.b1 CHROMAT_FILE:
MSMg01no398_j24.b1 PHD_FILE: MSMg01no398_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:25 2005
(502 letters)
>mm_chr17_52810206_52811103
Length = 898
Score = 932 bits (482), Expect = 0.0
Identities = 496/502 (98%), Gaps = 4/502 (0%)
Strand = Plus / Plus
Query: 1 ggcagaaaacaaaagtcattaatattttgactatgtaacatactacaatctctgcagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcagaaaacaaaagtcattaatattttgactatgtaacatactacaatctctgcagaca 260
Query: 61 gtccttgcaaacaaaaacacactgagatggggccttaccaaaggacagagggaactaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccttgcaaacaaaaacacactgagatggggccttaccaaaggacagagggaactaaac 320
Query: 121 aaggaatgcttagctgctgtaagagagctaatttggaattttgtaattgcactttgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaatgcttagctgctgtaagagagctaatttggaattttgtaattgcactttgaaat 380
Query: 181 gtctgtagttaggggagaaatagattgctagagctccatttattaattgaatacatttat 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtagttaggggaggaatagattgctagagctccatttattaattgaatacatttat 440
Query: 241 atattttgacatgtttatattcagctaaacttctaaaataatcataataaggacaaattg 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 atattttgacatgtttatattcagctaaact---aaaataatcataataaggacaaattg 497
Query: 301 ttggtgctttttataaaaactgtagtatattttggcagagggaaattattctaaaccaaa 360
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttggtgctttttataaac-ctgtagtatattttggcagagggaaattattctaaaccaaa 556
Query: 361 ataaacaatagtatctgtgagaagatttccatatttataaataaaagttttgaaagttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ataaacaatagtatctgtgagaagatttccatatttataaataaaagttttgaaagttga 616
Query: 421 aaaataatccatgtcccataatttgctttttgataattaacaaccttagtcctcaaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaataatccatgtcccataatttgctttttgataattaacaaccttagtcctcaaaagt 676
Query: 481 ggagaaaagcattttcaaatta 502
||||||||||||||||||||||
Sbjct: 677 ggagaaaagcattttcaaatta 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 898
Length adjustment: 10
Effective length of query: 492
Effective length of database: 888
Effective search space: 436896
Effective search space used: 436896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_j24.g1 MSMg01no398_j24.g1 CHROMAT_FILE:
MSMg01no398_j24.g1 PHD_FILE: MSMg01no398_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:25 2005
(475 letters)
>mm_chr17_52999278_53000153
Length = 876
Score = 890 bits (460), Expect = 0.0
Identities = 472/476 (99%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 1 tttcatgagaaatgatcctatttaagagagtatttgtcctttcaaatttcagcctcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tttcatgagaaatgatcctatttaagagagtatttgtcctttcaaatttcagcctcacaa 531
Query: 61 gtaaagacagtgacctattattcacagcaatcattctctcattggttatgctggcccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gtaaagacagtgacctattattcacagcaatcattctctcattggttatgctggcccata 471
Query: 121 gagaccttaccaggcaaccctaggaacactgaagacagactcctggctggcttgacacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gagaccttaccaggcaaccctaggaacactgaagacagactcctggctggcttgacacag 411
Query: 181 taggcactattatgtaaaactaagatttccagtggggg-aaaaaatctacttatttaaga 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 410 taggcactattatgtaaaactaagatttccagtggggggaaaaaatctacttatttaaga 351
Query: 240 aataatatattttctaaaacaaatcgggaaaagttagatttcaaaacatatcatggagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aataatatattttctaaaacaaatcgggaaaagttagatttcaaaacatatcatggagaa 291
Query: 300 aaacctcattgcagctgaaacaggagatttaaaatgttatgagttaaatccttcctgtaa 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaacatcattgcagctgaaacaggagatttaaaatgttatgagttaaatccttcctgtaa 231
Query: 360 agttatccagaaaaaaaatgtcactctaacaaataaaaaaataaaatttaaaagattatg 419
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 230 agttatccagaaaaaaaaagtcactctaacaaataaaaaa-taaaatttaaaagattatg 172
Query: 420 taaaaaaaaatgcaagcctcctacaaatatgtaatataaaagttagattagctcca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 taaaaaaaaatgcaagcctcctacaaatatgtaatataaaagttagattagctcca 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
