BAC Information

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BAC

Clone NameMSMg01-400F20
Chromosome17 (Build37)
Map Location 36,333,680 - 36,334,114
singlet/doubletsinglet
Overlap genenone
Upstream geneTnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127
Downstream geneEG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F20.T7 (MSMg01no400_f20.b1)MSMg01-400F20.TJ (MSMg01no400_f20.g1)
ACCAG500005AG500006
length810809
length of high quality
(start - end)
---433 (80 - 512)
definitionCHROMAT_FILE: MSMg01no400_f20.b1 PHD_FILE: MSMg01no400_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:39 2005CHROMAT_FILE: MSMg01no400_f20.g1 PHD_FILE: MSMg01no400_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNATNNNNNNCCCCNNNCCCACCCCCATTTTCANCACCTCCNCGNNA
NNCCTGANCTTTTCAAACTTTTATCATGAATGNNNGNTGNATCTTGTCAA
ANGCTTTTTCTGCCTCTAACCCCATGATCATCTGCTTTTTTCTTATAATC
TTGTTCTAAGCTAATAAAGGGAGTGGTGGGTATGGGGAGTCGNCTGCTGC
CCTCCCNNNNNNNNNNNNNNNCNCACACCCCTTCTTCCTTCNCNNNNCNN
CCNNNNNNNNNNNNNNNNNNTCCCNNACTCCCCTACCCCCNNNCCTTCNN
CCCCACCNNCNCCCCCCNCTCCCCCNACACAAACCCTTTTTTTTCCCCCC
CTCCNNNNCCCCCCCCNCNNCNCCCCCCCCCNCCCCCCCCCCCCNCCCCC
CNNNNCNCCCCCCCCCCCCCCCNNNACCNNCNCCCAANCNNNCNCNCCCC
CCCCCCCCCCNNCCCNCNNCCNCCCCCCCCCCCCCCCNCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCNCNCCCCCCCCCCCCCCCCCCNNCNCCC
CCCCCCCCCCCCCNCCCCCCCCNNCCCCCCCCCCCCCCCCNNCNCCCNCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCC
CCCCTCCCCCCCCCNCCCNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNNCCCCCCCNCCCCCCCCCCCNCCCCCCCCCCCCCCC
CCNCCCNCCCNCCCCCCCCCCCCCCCNNNCCCTTTCTTCCCCTTTTTTTT
TTTTTTTTTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGCAACCAGAGCTACATC
GAAAGATTCTGTTTCAAGGAAACAAACAAAAAGCAAAAAACAACAAACAA
AACAAAAACAAAAACACCCAAACAACAACAACAATAGAAAACAAAACGCA
AAAAAACAAAACAAAAAAAAAACAAAAAAAAACCACGGAACTGCAATAAT
TTGCAGAGGTCTCCACAGCACCACTTCTGTGAGGCTTCTGAAGTGACCTG
AGTAGTACACATTGACAGATCAGGAGGGGACTGTCAGGGTGAGGGTGGCT
GAGAAGGGGCTACAGTTAGGACGGAGGGGTAATTAATGGGCAGCTGCAAG
GTAGGTGTACTGGCTAGTTTTGTGTCAACCTGACACAGCTGGAGTTATCA
CAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTA
AGGCATTTTCCCAATTAGTAAACAAGGGGGAAAGGCCCCTGTGTGTGGGA
ACATCTCTGGGCTGGTAAACTTGGCCCTCTAGAAAACAGGAATGATTATC
CCTGTTAAAACATTCCCCCCATGGCCTTCGCATCCCCCCCTGCCTTCCAG
ACGGCTCGGCTCCCACACCCGCAATTCTCTCTCCGTCTACCAGCTACTAT
TTAAGTGGCTTTCCCAAACACAATCCCATCTCTCCTCATCTATTATTATC
CACCCATAAAGTTTTTTTCCTCTCTGTATTATTACCTCCTCTTCAGATAT
ATGACCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f20.g1 MSMg01no400_f20.g1 CHROMAT_FILE:
MSMg01no400_f20.g1 PHD_FILE: MSMg01no400_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:39 2005
         (433 letters)



>mm_chr17_36333434_36334266
          Length = 833

 Score =  781 bits (404), Expect = 0.0
 Identities = 428/436 (98%), Gaps = 4/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggcaaccagagctacatcgaaagattctgtttcaaggaaacaaacaaaaagcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagggcaaccagagctacatcgaaagattctgtttcaaggaaacaaacaaaaagcaaaaa 622

                                                                       
Query: 61  acaacaaacaaaacaaaaacaaaaacacccaaacaacaacaacaatagaaaacaaaacgc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 acaacaaacaaaacaaaaacaaaaactcccaaacaacaacaacaatagaaaacaaaacgc 562

                                                                       
Query: 121 -aaaaaaacaaaac-aaaaaaaaaacaaaaaaaaaccacggaactgcaataatttgcaga 178
            ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaacaaaacaaaaaaaaaaaaaaaaaaaaaccacggaactgcaataatttgcaga 502

                                                                       
Query: 179 ggtctccacagcaccacttctgtgaggcttctgaagtgacctgagtagtacacattgaca 238
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctccacagctccacttctctgaggcttctgaagtgacctgagtagtacacattgaca 442

                                                                       
Query: 239 -gatcaggaggggactgtcagggtgagggtggctgagaaggggctacagttaggacggag 297
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tg-tcaggaggggactgtcagggtgagggtggctgagaaggggctacagttaggacggag 383

                                                                       
Query: 298 gggtaattaatgggcagctgcaaggtaggtgtactggctagttttgtgtcaacctgacac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggtaattaatgggcagctgcaaggtaggtgtactggctagttttgtgtcaacctgacac 323

                                                                       
Query: 358 agctggagttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccagc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agctggagttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccagc 263

                           
Query: 418 tgtaaggcattttccc 433
           ||||||||||||||||
Sbjct: 262 tgtaaggcattttccc 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)