BAC Information

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BAC

Clone NameMSMg01-401B21
Chromosome17 (Build37)
Map Location 20,867,931 - 20,868,521
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2
Downstream geneV1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401B21.T7 (MSMg01no401_b21.b1)MSMg01-401B21.TJ (MSMg01no401_b21.g1)
ACCAG500578AG500579
length759789
length of high quality
(start - end)		632 (42 - 673)397 (76 - 472)
definitionCHROMAT_FILE: MSMg01no401_b21.b1 PHD_FILE: MSMg01no401_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005CHROMAT_FILE: MSMg01no401_b21.g1 PHD_FILE: MSMg01no401_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTAGTCCTCATGTCACTNNNCGACTCACTATATTCAGAGGATCCGCGGA
ATTCATAAGTAGATTCCTTTAACTTTAAGTTGCTAGTGCCTTAATAACTT
TTGTTGTGTACATTGGTTAGATTCAATGTATGTTCAGATGTATTCTCCAT
TAACTGTACAAGTTTGTTTGGAGGACAATCTCATTTGCACTTGCTTAGAT
GAAATTAATGTTATTATTTTGAGACATTGTCTGTCAGTTGCCTATAACTC
TTATTAGACTAGATTGGGTATTCATTGATTCCAGATAACTTTTGATTCTG
ATTTTCCAGTACTTTGACCCAAATTGAATGACATTAACATATATATTTCT
ATTCCTATTATCGTCAAGGATTTATGTGTTTACCTTCTGCCATTCCTAGG
CGATACATCATGAAAGCAAATTATCATTTTCTCTGCCTCATATAGTCTTA
CTTCTTTGAAAGCGTTGAATTGTAGACTTAGTAGGAACTGGGCTCCAAAA
TTTGCATTTCAATCTGATGAGGTTTTCTGTACCAAATGATCAGTACTGAT
AACAAATATACAGTTAGTATTATACAGACTGTATTTATGTTTTATACAAA
ATATTCAAACATGTATATGTATAAATATATGAATATATGCATATAAATAT
ATTTATATATAAACATATATTAGCTATATGTTTATATATTTACATATATA
TGTAACATCAATTATTGAAAAAGGGAGTCATAATAAAAAGCGAGCAAAAC
TTTTAATTT

CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAGTTTTGCAGACCAATACATGG
AACTAGAAAATATTATGATGAATGAGTTAACTCAGACCCAAAAGGAAATG
CATGGTATGTAGTCACTAATAGGTGGATATTAGTAAAAAATTACAGAATG
CCCATCATACTATCCACAGAACTCAAGAAGGTTAACAAGTTGAAGGACCC
AAGTAAGGATGCCTGTCTCAAGCCTCCTTGGGAGGGAGAAGAAAGCAGTC
ACAGAGGGCAGAGGGAGGGAGAGTCCTCTGGTGGGAGAGGGAACAGGGAG
GGGAAAATGGGAACATGATCAGGTATTGGGGGAGGGAAACAGGAGTGAAG
CCCTGAGGGCCAGCAGAAAGAATAGAAACAGGCAACTTTAGGAGGTGGGA
GGTGGCAAGACCCTCTAGGATGTAGCAGAGACCTGGGAGGTGAAAGACAC
TTAGGACTCATAGGGAAGGACCTTAAATGAAGTGCACAACAGTGCCACAC
CGCCTCCAATAAGGTTCTGTGTGACAATTTTACAGACTGAGGCGTTTGAC
CTCCCACATGGGGAGGTTTCCCGGAACTGGTTATGTCATCCCTTGCCCAA
AAGAATTTATTGAGCCCCTCTTTTTTTTGGCTCCTTTTCCGGTTCATTTC
TTTTCAATCCCCCTTTTCTATCAAAGTAAATGGCCCTCCTTTGCCCTTTT
CCCCGTATTTTTTTCCTACTTTTTTGTCTCCCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_b21.b1 MSMg01no401_b21.b1 CHROMAT_FILE:
MSMg01no401_b21.b1 PHD_FILE: MSMg01no401_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:40 2005
         (632 letters)



>mm_chr17_20867706_20868737
          Length = 1032

 Score =  944 bits (488), Expect = 0.0
 Identities = 570/606 (94%), Gaps = 16/606 (2%)
 Strand = Plus / Plus

                                                                       
Query: 26  ctttaactttaagttgctagtgccttaataacttttgttgtgtacattggttagattcaa 85
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 226 ctttaactttaagttgctagtgccttaataactttttttgtgtacattggttagattcaa 285

                                                                       
Query: 86  tgtatgttcagatgtattctccattaactgtacaagtttgtttggaggacaatctcattt 145
           |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 286 tgtatgttcagatgcattctccattacctgtacaggtttgtttggaggacaatctcattt 345

                                                                       
Query: 146 gcacttgcttagatgaaattaatgttattattttgagacattgtctgtcagttgcctata 205
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 346 gcacttgcttagatgaaattagtgttattattttgagacatggtctgtcagttgcctata 405

                                                                       
Query: 206 actcttattagactagattgggtattcattgattccagataacttttgattctgattttc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 actcttattagactagattgggtattcattgattccagataacttttgattctgattttc 465

                                                                       
Query: 266 cagtactttgacccaaattgaatgacattaacatatatatttctattcctattatcgtca 325
           |||| |||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 466 cagtgctttgacccaaagtgaatgacattaacatatttatttctattcctattatggtca 525

                                                                       
Query: 326 aggatttatgtgtttaccttctgccattcctaggcgatacatcatgaaagcaaattatca 385
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cggatttatgtgtttaccttctgccattcctaggcgatacatcatgaaagcaaattatca 585

                                                                       
Query: 386 ttttctctgcctcatatagtcttacttctttgaaagcgttgaattgtagacttagtagga 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 586 ttttctctgcctcatatagtcttacttctttgaaagcgttgaattgtagacttggtagga 645

                                                                       
Query: 446 actgggctccaaaatttgcatttcaatctgatgaggttttctgtaccaaatgatcagtac 505
           |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 646 actgggctccaaaacttgcatttgaatctgatgaggttttctgtaccaaatgatcagtgc 705

                                                                       
Query: 506 tga-taacaaatatacagttagtattatacagactgtatttatgttttatacaaaatatt 564
            || ||||||||||| ||||||||||              ||||||||||||||||||||
Sbjct: 706 -gaataacaaatatagagttagtatt--------------tatgttttatacaaaatatt 750

                                                                       
Query: 565 caaacatgtatatgtataaatatatgaatatatgcatataaatatatttatatataaaca 624
           |||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||
Sbjct: 751 caaacatgtatatgtataaatatatgaatatatgcacataaatatgttcatacataaaca 810

                 
Query: 625 tatatt 630
           ||||||
Sbjct: 811 tatatt 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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