BAC Information

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BAC

Clone NameMSMg01-401C01
Chromosome17 (Build37)
Map Location 44,409,978 - 44,410,220
singlet/doubletsinglet
Overlap geneClic5
Upstream geneGpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4
Downstream geneRunx2, Supt3h, 4930564C03Rik, EG210562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401C01.T7 (MSMg01no401_c01.b1)MSMg01-401C01.TJ (MSMg01no401_c01.g1)
ACCAG500586AG500587
length755743
length of high quality
(start - end)
236 (76 - 311)243 (82 - 324)
definitionCHROMAT_FILE: MSMg01no401_c01.b1 PHD_FILE: MSMg01no401_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005CHROMAT_FILE: MSMg01no401_c01.g1 PHD_FILE: MSMg01no401_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTAATATTCGTTGCCGCCATATGACTCATTTTTTCCAGAAGAGCGNGG
AANACNNGGNTTACCACAAAAAAACTTTTTTAATGGGGTTATTTGATTTT
TTGGAGTCCACCTTCTTGAGTCCTTTATATATATTGGATATAATCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTACAGAATCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTCTAT
TCAGGAATTTTCCCTTTTTTTTCATATCTTTGAGGCTTTCCCCCACTTTC
TCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACTAGGAGATAGATTGCAAGCTTGTACAATCA
CTCTGGAAATATATCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACC
ATAGGATCCTGCAATACCTCTCCTGGGCATATATCCCCAATATGTCCTAA
CTGGTAAGAAGAACATATGCTCTATTATGTTCATAGCAGCCTTATTTATA
TTAGTCTTAACTTGGAAATGATTCTTACGCTTTCTCCATTCTATTCATGC
ATTTTTTTTATTGTGACATTTCCTATTTTTTCCTTCTACCCATTCCCTCT
ATTTATCCCTCACCCCTTTTTTTTTTTTCCCTTCCGTTCCCCCTCCCTTT
TTCCC
TGCCGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGATTTGTTAACATGG
AGCCCTGCAGGTGTGGGTCCAGCAGAGATGAAACCCGGCCTGCTGAGGTG
AGATGGATAGTTGGCTGTATGGGGAGCTGATGTTTGCAGCCGAGTCCCTG
CTGTGTCCTCTTCTTTCTGGGCTGGCACATTGTAGTTGTAGGTGTGTGGG
CAAAATAACAGACATGCTTTGATGGCTGCTATAGAGATAAACTACAGACT
AACTGGAAAGGGTATATGCCTCCTGTTTTGTACATTTAGCCTTGCTGCAA
GGTAATAGTAACTTTTCTTCAGAGCCAGACAAACTTTCCTGGTGAGGCAC
AAGTAGAGTGTTCACAACCCCAATGTCACAAAAACAGACAGACAGACAGA
CAGACAGACAGACAGACAGACAGACAGACAGACAACAAATTGGGGATAGA
TGTGGAGATGAGCATAGGTTTTGAGTCATTTTCTAGCAATGGAGAGATTC
TATGGAGGAGAGGGGGGAATCACAGATTACTTTCTACACTAGAACTTGTG
TCCATCCGTATAACCTGACACCATAGGCTGTAGTAGTTGATGTTCATTCC
GCCTTTTCCTAATTTTCCAGACATGCTACTGCTATCTTCTTGCTTTCCTT
TCTCCCTTATCTACCTTCTTTTTGTCCTTTATCTTTTATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_c01.g1 MSMg01no401_c01.g1 CHROMAT_FILE:
MSMg01no401_c01.g1 PHD_FILE: MSMg01no401_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:41 2005
         (243 letters)



>mm_chr17_44409778_44410420
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagatttgttaacatggagccctgcaggtgtgggtccagcagagatgaaacccggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagatttgttaacatggagccctgcaggtgtgggtccagcagagatgaaacccggcct 260

                                                                       
Query: 61  gctgaggtgagatggatagttggctgtatggggagctgatgtttgcagccgagtccctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgaggtgagatggatagttggctgtatggggagctgatgtttgcagccgagtccctgc 320

                                                                       
Query: 121 tgtgtcctcttctttctgggctggcacattgtagttgtaggtgtgtgggcaaaataacag 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtcctgttctttctgggctggcacattgtagttgtaggtgtgtgggcaaaataacag 380

                                                                       
Query: 181 acatgctttgatggctgctatagagataaactacagactaactggaaagggtatatgcct 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgcttcgatggctgctatagagataaactacagactaactggaaagggtatatgcct 440

              
Query: 241 cct 243
           |||
Sbjct: 441 cct 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)