BAC Information

Click to search

BAC

Clone NameMSMg01-403G02
Chromosome17 (Build37)
Map Location 41,878,050 - 41,878,193
singlet/doubletsinglet
Overlap genenone
Upstream geneCrisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403G02.T7 (MSMg01no403_g02.b1)MSMg01-403G02.TJ (MSMg01no403_g02.g1)
ACCAG502304AG502305
length749839
length of high quality
(start - end)
565 (45 - 609)145 (73 - 217)
definitionCHROMAT_FILE: MSMg01no403_g02.b1 PHD_FILE: MSMg01no403_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:38 2005CHROMAT_FILE: MSMg01no403_g02.g1 PHD_FILE: MSMg01no403_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGAATGTGATAACACAGCACACCCAAACTTATGTAACACAATGA
AAGCAGTGCTAAGAGGAAAATTCATAGTACTGTGTCCTAAAGAAATTGGA
GAGATCCTACACTAGTAACTTAACAACACACTGGAAAGTCCTAGAACAAA
AACAAACACACCCAAAAGGAGTAGATGGCAGGAAATAGTCAAATTCAGAA
CAGCAATCAACCAAATAGAAACAAAGAGAATGATACAAAGACCCAACAAA
CCCAAAGCTTGTTCTTTGAAAAAATTAACAAGCCTAACTAAAGGGAACTG
AGAGAAAGTACCCAAATTAACAAATCAGTAAGGAAAAGGGAGACATAACA
ACAGAAACTGAGGAAATTCAAAAAAATCATCAGGTGCTATGACAAAAGCT
TATACTCAATAAAACTGAAAGTCTAGATGACATGGTTGATTTTTCTAGTT
AGATACTGCATACCAAAGTTAAATCAAGAGCAGCTAAAGTATCTAAACTG
GCTCATGTGCCCTAAGGCAGTAGAAAAAGTCCCTAAAAACCTCCAAAACA
AAAATAGCCCAGGGCCAGTTGGCTTTAGTGTGGAATTCTACCAGGCCTTC
AAAGAAGAGCTAATATCAACACTCCTCAAACTGTTCCATAANATAGAAAT
AGAAGGGACATTACATAATTCCTTCTATGAAGCCCCATTAGTCTGAACG
CAATGCAATGNNTANCCTGGGGGCCGCCTGTTTCCCNAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTCCAGTAATTTATACGTCTGCTGAT
AAGAATTTTGTTGCTATACAATAAATCAAGCCTGCATTGAAATTAAATTC
AAATTTGAGAGCTTATGAAGTATCCTTTATGGTTAGCTCATTCCTTAAAA
ACTCGTTTGTGGCTCANAGCAGAACTAGTGAATTTCTTGGAGGAATGTGA
GAAATTGAAGATAGCAAACTNTCAACTTCTTTAATCAAAGTTATATCCTA
CAAACTCANTTTTTGTATGTTTAGGAAAGGNGATAGTAATAGTTTTATTT
TTCTGGTTCTCCCATTTCAATATGGCTTTTGTAAACATTTTACTGTTTTG
ATAAAAAGGCGCTTTAATTTAAATTTTAAAGGGNAATTAACTATTTTTGC
TCTGAAAGGGATGGTTTGGAAAAACCAAGACATGTCGGCCCCTTGGGGGC
GCTGGGGGGAAAACCCAAAAAAAAAAACGCCCTTTAAAAATCCCCCTGGC
CCAAAAGGGACAATTTTCTTAAAATAGTGTGGGGGGTAGGGCCCCTTCCN
NNNNNAATTCCTTTAAAATANCTTCTCTCCTTTTCCAAACTCGCAATCTT
TTTCTTAAAATTTTTTTTTTNTTCCCTTTCTTCTCTCTCCTCCCCCTTTT
CCCCCTCTTCCCTTTTCCCTGTCCCCTTTTATATATCCCCTTTTTGGCGT
CCCCTTTTAATCCCTCCCTCTTTTTTTTTTTTTNCCTTTTTTTTCCTTCA
ACAGAAGAGGGCGCGGGGGTGAACCCTNTTGACCCTNNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_g02.g1 MSMg01no403_g02.g1 CHROMAT_FILE:
MSMg01no403_g02.g1 PHD_FILE: MSMg01no403_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:39 2005
         (145 letters)



>mm_chr17_41877850_41878394
          Length = 545

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattccagtaatttatacgtctgctgataagaattttgttgctatacaataaatcaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cattccagtaatttatacgtctgctgataagaattttgttgctatacaataaatcaagcc 285

                                                                       
Query: 61  tgcattgaaattaaattcaaatttgagagcttatgaagtatcctttatggttagctcatt 120
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 284 tgcattgaaattaaattcaaatttgagaggttatgaactatcctttatggttagctcatt 225

                                   
Query: 121 ccttaaaaactcgtttgtggctca 144
           ||||||||||||||||||||||||
Sbjct: 224 ccttaaaaactcgtttgtggctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)