BAC Information

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BAC

Clone NameMSMg01-403O01
Chromosome17 (Build37)
Map Location 28,603,973 - 28,604,167
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5
Downstream gene4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403O01.T7 (MSMg01no403_o01.b1)MSMg01-403O01.TJ (MSMg01no403_o01.g1)
ACCAG502684AG502685
length779763
length of high quality
(start - end)
196 (117 - 312)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no403_o01.b1 PHD_FILE: MSMg01no403_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:19 2005CHROMAT_FILE: MSMg01no403_o01.g1 PHD_FILE: MSMg01no403_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGAATTCTTTTTT
TTTGCTTTATATTGAGACAAGCTCTCTCTACAGAGCCCTGGCTGTCCTGA
AATTCACTACGTACACCAGGCTGGCCTTGAACTCAAAGAGATCTGCCTGC
CTCTACCTCTGCCTCCTGAGTGCTGGGATTAACGGTGTGCATCATCACTG
CCAGCTTTAAAGGAGGAAGTTTCTAATATTGCAGTTTTTCTTGTTCTTTG
TTATATGTACATGCACATGCATTATTCTTTTGTTTTGGGGCTAAGTAGTC
CAGGCTGGCCTTAAATGCTTGGTCCTGCTACCTTTGGCTCTAGAGTGCCA
GAATTTTAGGGGCCTGCCTCCACACCTATCTCACTGTGGTATACTTTAAC
AAAAGTGGCAAATTGTGGGATCAGTCACATACAATACTTAAGTGTTCCAT
TAACCGAGCTTTGTCTTCCCGCGTCCTTTGAGGAATGTCAGTTGCGTTGG
AGTCATTGTTTCCATAGCTCAGTTGAAGCTGCTCTTGTCACGATTGATTT
TGCTTTGGACCCCGTAACCTTATCCATGTCTGTCTCTAAACTACTCTACC
GATCATGATGATTGAATGTCTTTGTCTACCACATATTGGTTCTCTAGCTG
TTTTATTCTTTCTTCTCTTAACGGTCGGTTCTTACGCGCCTTCTTCCATT
TCATTTCCCCCGCCCCTCGCCCTCCTGTGTACCCTCACCGTTCCCCCACC
ACTCTCCCCCCTCCTCTCTCCCCGTTCTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGGCTACAGAGTAGGT
CCTTTTTGGTTTTCCAAGATAGGGTTTCTCTGTGTAACCTTGGCTATCCT
AGAACTCACTCTGTAGACCAGGCTGAACTCAGAGATCCATCTGCCTCTGC
CTTCTGAGTGTTAGAACACATAGTTGTGAGTCTTTCAAAGGGGAAAAACA
TTATGAACAAACAAAACAAAAACGGGGTATGTGTGTGGGGTGCCTGGAGA
GATGGCTCAGCAGTTATTATTTTTGACTGCTCTTCCAGAGGTCCTGAGTT
CAATTCCCAGCAACCACATGGTGGCCTACAACCATCGGTAATGAGATCTG
ATGCCCTCTTCTGGTGTGTCTGAAGACAGCTATAGAAATTATTATATGTA
TGTGCGTGCGTATATATATATATGTGTCGGTCTCCCTTTTCCCGCCTCCC
CCCTTTTCCCTCGCCCCCTCTCTTTTCCTTCTCTCCTCGGTGTGTTCTTT
CCTCTCTTCTCGTCGCTCCACCCCCTTCCCACCATCTCCTGGTTCGTTAC
TGGTTTTTCGCGCCCCTCCCCTTTCTCCCTCGATCTCCCCACGCCCCTCT
TCTCTTGCTACTCCCTTTTTTTTTTTTCTCCTATACCGGGCTATGCCGGT
CACCCCTTCTTACCTCTTTATCCCGCTTTTACCGCCCATGCCCGTCCATA
TCCCTCTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_o01.b1 MSMg01no403_o01.b1 CHROMAT_FILE:
MSMg01no403_o01.b1 PHD_FILE: MSMg01no403_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:19 2005
         (196 letters)



>mm_chr17_28603687_28604282
          Length = 596

 Score =  346 bits (179), Expect = e-100
 Identities = 191/195 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctggccttgaactcaaagagatctgcctgcctctacctctgcctcctgagtgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caggctggccttgaactcaaagagatctgcctgcctctacctctgcctcctgagtgctgg 422

                                                                       
Query: 61  gattaacggtgtgcatcatcactgccagctttaaaggaggaagtttctaatattgcagtt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 421 gattaacggtgtgcatcatcactgccagctttaaagggggaagtttctaatattgcagtt 362

                                                                       
Query: 121 tttcttgttctttgttatatgtacatgcacatgcattattcttttgttttggggctaagt 180
           |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 tttcttgttcattgttatatatacatgcacatgcattattcttttgttttgaggctaagt 302

                          
Query: 181 agtccaggctggcct 195
           |||||||||||||||
Sbjct: 301 agtccaggctggcct 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)