Query= MSMg01no404_b12.b1 MSMg01no404_b12.b1 CHROMAT_FILE:
MSMg01no404_b12.b1 PHD_FILE: MSMg01no404_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:38 2005
(247 letters)
>mm_chr17_67841062_67841707
Length = 646
Score = 424 bits (219), Expect = e-123
Identities = 240/247 (97%), Gaps = 1/247 (0%)
Strand = Plus / Plus
Query: 1 ccttcaacgttattctttaggacacactcatcttctttttctttttgcgtgtaagtatga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcaatgttattctttaggacacactcatcttctttttctttttgcgtgtaagtatga 260
Query: 61 atgcatttgctaagagggcttatgatgttcacagtttcattgctattttgaaaattgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcatttgctaagagggcttatgatgttcacagtttcattgctattttgaaaattgtat 320
Query: 121 aatatgtcacacaattttccatgttctaagtattcccctgtaacatcctcttgtgtctta 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aatatgtcacacaattttccatgttctaagtattcccctataacatcctcttgtgtctta 380
Query: 181 ttgttattaataaatgaaaaaactccctgtggttttcaaactgttttaggcagcagactt 240
||| ||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||
Sbjct: 381 ttggtattaataaatgaaaaa-ctccctgtagttttcaaactgctttaagcagcagactt 439
Query: 241 ctcttta 247
|||||||
Sbjct: 440 ctcttta 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_b12.g1 MSMg01no404_b12.g1 CHROMAT_FILE:
MSMg01no404_b12.g1 PHD_FILE: MSMg01no404_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:38 2005
(299 letters)
>mm_chr17_68029223_68029921
Length = 699
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 9 agtttgcagagactgaaaatgtgccagccaggctggactctttcaagaaactaaggaagt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtttgcagagactgaaaatgtgccagccaggctggactctttcaagaaactaaggaagt 440
Query: 69 actgctctctctacctgtctgtatgtcacacattctttctcagacatccaagctgcaaga 128
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actactctctctacctgtttgtatgtcacacattctttctcagacatccaagctgcaaga 380
Query: 129 gttgacctcaaagtagaagagactggactagaagttactaaaggctgtgatgggaaggca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gttgacctcaaagtagaagagactggactagaagttactaaaggctgtgatgggaaggca 320
Query: 189 gaggagagatggatactgggataataatttctagtgctcttataagcatggcaatatggc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaggagagatggatactgggataataatttctagtgctcttataagcatggcaatatggc 260
Query: 249 tataattcacagttacctgttagatgttgtgttagggtttccattgctgag 299
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tataattcacagttacctgttagatgttgtgttagggtttccattgctgag 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
