BAC Information

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BAC

Clone NameMSMg01-404G16
Chromosome17 (Build37)
Map Location 68,963,030 - 69,163,887
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
Downstream geneEG622645, Epb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G16.T7 (MSMg01no404_g16.b1)MSMg01-404G16.TJ (MSMg01no404_g16.g1)
ACCAG503091AG503092
length837753
length of high quality
(start - end)		174 (63 - 236)514 (64 - 577)
definitionCHROMAT_FILE: MSMg01no404_g16.b1 PHD_FILE: MSMg01no404_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:05 2005CHROMAT_FILE: MSMg01no404_g16.g1 PHD_FILE: MSMg01no404_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,963,030 - 68,963,190)(69,163,374 - 69,163,887)
sequence
GGCCGCTAAACGACNCACATTTTCAAACGATCCGCGGAATTCACAGCTTT
CCTTATGCTAGCTCAGTCAATGTTGGAGCATTTTCTTTAGCATGATTTCT
TTTCTGCTTTAAACTCTCTTTCCAAAGCAAATTCTCTTTCTCAAGATCCT
GCTCTTCCCTGCCCTGCCTGCCTCTCACACAGGCTGGCTGGCAGTCTGAC
TCCTGTTCATTGCTGAGTTATGGTGGTGGTGGTGGGGTTAGTTTCNNANN
NNTNTTTTTTTTTTTTCTTNTNTTTTTTTTTTTTNNTTNNNNNNNNNNTT
TTTTTTANTTTNNANNNNNNCCCNNNNANNANAAAAAAAATTTTTTTTTC
CCTCCCCCATTAAAAAAGAGACCACTAAAAACAAAAAAATAAAAAAATTC
CCTCCCCTTTATTTTTATTCTTTCTTATATAATATAATCAATCCACTTTC
CCACTTTTTACTTATATTTTAACATATATTATTTTCCTACACAATCCATT
TACTTATATTTAATTTTCATAACATATCCTTATTTATTTAATAATTATCT
ACCATATCTCTCCTAACTTTATTATATCATCCTATTTTCTCCCCTCCCTC
TCTTAATCTTTTCTTTATAATTTATAAATAAAATACAAATTAATAACATC
TACTTAATCGCCATATAATTATCTATTCCTCCCCACATATATAAAAATAT
TTATTTTTTTTTTTTAAATCACAGAATATATCTTTTCCCTGTTCCTCACA
TCTATATATATTAATACATTCAATCGCCTCTCCTCTCCTTTCACAAATAA
TTATTTATATATAACTTTTACTCCTCCCTCTTCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGGACATTTGCATTCTGGACAAGCGCTGTGTTTCTGA
GCTATGCCCCAAGCCCTATCGCCATGCTTTAAAGCTGCACTTCACAAGAG
GGACCCAGTGTCCCTGAGAGCTCAGCCAGCGCTCTGTTCCCTGTAGATAC
TGGTACTACTGATAGGGAATCCACAGTTGGGGAGGGAGCCTTTCCTGTAG
GGTAAAGGAACTAAGGGGAGCAAGTAGCTAATATGTTCATTTCTCTATCT
CTGGCCCAATTACCTTCATTCATCCAGGTAGACATGATAGCCATCTTGTA
CATGTGTATTTGTATTTTAAATGAGACCTCAGTTGGGGTCAGTGATGTCT
TAGAAAGTATTAGAAAAGGTGTCTTATTATGCATGGTTTAAGTTTCCACC
AGACAAAGCTGCTGAGCAAGCCAACAGTATCCCTCCTCCCAAAAGCCATT
ATTATTATTGTTAATTTATCAAGAGCTTCTTTTTGTTAGTAAAAATATAA
TAAACACACACTTATTCTCAAGAAATGAGTCTGGNGCAGGACTCCTTTAG
ATGCTGAAATCACGGAGGCTCAAGTCCTTTGAATAAAGTGTTCCCCTCTC
CACTACCTAAGACTTCCTCCGTAAACTCTTGAAGCAGGCAACCACACTCC
CCATATCTGGATCCATGGCTTCCGCCTGAACTATGGGTAAAACTGTACTA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g16.b1 MSMg01no404_g16.b1 CHROMAT_FILE:
MSMg01no404_g16.b1 PHD_FILE: MSMg01no404_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:05 2005
         (174 letters)



>mm_chr17_68962830_68963403
          Length = 574

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtcaatgttggagcattttctttagcatgatttcttttctgctttaaactctctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtcaatgttggagcattttctttagcatgatttcttttctgctttaaactctctttc 260

                                                                       
Query: 61  caaagcaaattctctttctcaagatcctgctcttccctgccctgcctgcctctcacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 caaagcaaattctctttctcaagatcctgctcttccctgccctgccttcctctcacacag 320

                                                    
Query: 121 gctggctggcagtctgactcctgttcattgctgagttatgg 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggctggcagtctgactcctgttcattgctgagttatgg 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no404_g16.g1 MSMg01no404_g16.g1 CHROMAT_FILE:
MSMg01no404_g16.g1 PHD_FILE: MSMg01no404_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:05 2005
         (514 letters)



>mm_chr17_69163174_69164087
          Length = 914

 Score =  963 bits (498), Expect = 0.0
 Identities = 510/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacatttgcattctggacaagcgctgtgtttctgagctatgccccaagccctatcgcc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aggatatttgcattctggacaagcgctgtgtttctgagctatgccccaagccctatcgcc 655

                                                                       
Query: 61  atgctttaaagctgcacttcacaagagggacccagtgtccctgagagctcagccagcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atgctttaaagctgcacttcacaagagggacccagtgtccctgagagctcagccagcgct 595

                                                                       
Query: 121 ctgttccctgtagatactggtactactgatagggaatccacagttggggagggagccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctgttccctgtagatactggtactactgatagggaatccacagttggggagggagccttt 535

                                                                       
Query: 181 cctgtagggtaaaggaactaaggggagcaagtagctaatatgttcatttctctatctctg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 534 cctgtagggtaaaggaactaaggggagcaagtagctaatgtgttcatttctctatctctg 475

                                                                       
Query: 241 gcccaattaccttcattcatccaggtagacatgatagccatcttgtacatgtgtatttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gcccaattaccttcattcatccaggtagacatgatagccatcttgtacatgtgtatttgt 415

                                                                       
Query: 301 attttaaatgagacctcagttggggtcagtgatgtcttagaaagtattagaaaaggtgtc 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 attttaaatgagaactcagttggggtcagtgatgtcttagaaagtattagaaaaggtgtc 355

                                                                       
Query: 361 ttattatgcatggtttaagtttccaccagacaaagctgctgagcaagccaacagtatccc 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttactatgcatggtttaagtttccaccagacaaagctgctgagcaagccaacagtatccc 295

                                                                       
Query: 421 tcctcccaaaagccattattattattgttaatttatcaagagcttctttttgttagtaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tcctcccaaaagccattattattattgttaatttatcaagagcttctttttgttagtaaa 235

                                             
Query: 481 aatataataaacacacacttattctcaagaaatg 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 aatataataaacacacacttattctcaagaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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