BAC Information

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BAC

Clone NameMSMg01-405B11
Chromosome17 (Build37)
Map Location 88,516,105 - 88,516,467
singlet/doubletsinglet
Overlap genenone
Upstream geneSocs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11
Downstream geneEG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B11.T7 (MSMg01no405_b11.b1)MSMg01-405B11.TJ (MSMg01no405_b11.g1)
ACCAG503604AG503605
length780798
length of high quality
(start - end)
360 (75 - 434)30 (134 - 163)
definitionCHROMAT_FILE: MSMg01no405_b11.b1 PHD_FILE: MSMg01no405_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:59 2005CHROMAT_FILE: MSMg01no405_b11.g1 PHD_FILE: MSMg01no405_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTATAATTTGCGGGCGGTAATACGAATCACTATTCCAAAAGGATCC
GCGGAATTCCTCAATTGCTGGCCTCACCGAGGGAACCCACTGCACCAATA
ATTCAAAGTGTCGGTGCATTTTCCCAGGATATGCATATTTCTTTTATGTT
GCGGTATTTCTGGCCTTAAGGTTGATTTTATCCGGTTGTGCTTGGTCTTC
AATCATTTGCTTTAATGAATATTGCTGCTGCCAGTTCCCGCAGTGGGTTG
TTGTGAGCATTTCAGTAATGTCTGACTCTGAATGTAATAGGAACTTATTG
TAGAAAATGGAAACATTTTCTTGTTTTCAACGTTCGGTTTTTCTTTCTTG
ACTTTTGTTTTTTTTATTTTTTTGTTTTTTCTTTTTGAGACAGGGTTTCT
CTGCGCAGCCCTGGCTGTCCTGGAACTCACTCTGTATACCAGGCTGGCCT
CGAACTCATAAATATGCCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
GCGCGCGCCACCACGCCGTATGGTTTTTTTATTCTTTTTGAGACCTACTC
CCTCTTTGTACTCCTGTTTGTTTTGGTACTCTTCTCAATATTGTTTTGTT
CTTTATCTCTAATTCCTGTCCTGTTTCTTGTTTTATTTTTCTGTATTCGC
CCCCCTTGTCTCTTATTTTTGTTTTTCTATTGCTTCCTCTTTCTGCTGTT
TTCTTGTCGACTCTCTTAGCCCTTTTATTCTTTTATCTTTGCTTCTTCTT
CACTCACCATCCTTTTTTCTCTCTTCCCCC
TTCTATTTCTTGTGTGTTTCGTTGATCGCCTGTTCTGTCTAATTTAGGTG
AACTATATAAGATCCGCGTAACTCACTTTGTGGCCTATGCTGGCTCTATC
TCTGTCCCATGCTGGCCTCAATACTACAGTGGCCTTTATTTATGCCTCAG
CTTCTCGAGTGCTGTGTTAATCTGCCTGAGTCACATCTGGGTTCCACAGA
TGTAGTTACCACATTTTGCTTTGTTATTTATTTATTTATTTGGTTTACTT
ACTTACCTGTTACCATTACTTATTGATCTATGGCCTTTCCCCGTTTTATA
TTTATTACACTATACTTTTTGTTGTCTGTGTGCTCACGTATCTCTTGTGA
ATGTTGTATTCCTGTATGCTTTACTGTTTTTACTTTATATATACGCTGCA
TGTTTAGGCTGCTTTTCGTTTCTTATTTATCTTTCCACTTATCCGTCCTT
ATTTGTTTTTGCGTTATCGTCATTTTTTCCGCCTTTCCCTTCTCCTCCCC
TTTTCCTTTCTCCTTTTTGCCTTTTCCCTTTTTTCCCCTTTACCTCTTTC
TTTTCTCCCTATATTTTCTTTTCCCTTCCATTTTATTCTTCCATTTTCTC
CTATGATATTTTCCGCCTCCATTATTTTTCTCTTCGCCGCGTGTTTTTGT
ATTTATCCACCCCTCATTCTTCTCCCACCTTCCTCCTTTCTCCTTATCAT
CGCCGCCTCCTTCTGTTTTTCCTCTCTTCTTTTTTTTCCCACTTCTTTTC
TTTCCCCGCCGCCCATTTTCTTTTTTTCCCTATTTCTCTTCTCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b11.b1 MSMg01no405_b11.b1 CHROMAT_FILE:
MSMg01no405_b11.b1 PHD_FILE: MSMg01no405_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:59 2005
         (360 letters)



>mm_chr17_88515971_88516728
          Length = 758

 Score =  574 bits (297), Expect = e-168
 Identities = 346/367 (94%), Gaps = 11/367 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccgagggaacccactgcaccaataattcaaagtgtcggtgcattttcccaggatatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caccgagggaacccactgcaccaataattcaaagtgtcggtgcattttcccaggatatgc 438

                                                                       
Query: 61  atatttcttttatgttgcggtatttctggccttaaggttgattttatccggttgtgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 437 atatttcttttatgttgcggtatttctggccttaaggttgattttgtccggttgtgcttg 378

                                                                       
Query: 121 gtcttcaatcatttgctttaatgaatattgctgctgccagttcccgcagtgggttgttgt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 377 gtcttcaatcatgtgctttaatgaatattgctgctgccagttcccgcagtggactgttgt 318

                                                                       
Query: 181 gagcatttcagtaatgtctgactctgaatgtaataggaacttattgtagaaaatggaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagcatttcagtaatgtctgactctgaatgtaataggaacttattgtagaaaatggaaac 258

                                                                       
Query: 241 attttcttgtttt--caacgttcggtttttctttcttgacttttgttttttttatttttt 298
           |||||||||   |  |||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct: 257 attttcttg---tgacaacgttctgtttttgtttcttgacttttg-tttttttatttttt 202

                                                                       
Query: 299 t-----gttttttctttttgagacagggtttctctgcgcagccctggctgtcctggaact 353
           |      ||||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 201 tatttatttttttctttttgaggcagggtttctctgtgtagccctggctgtcctggaact 142

                  
Query: 354 cactctg 360
           |||||||
Sbjct: 141 cactctg 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 758
Length adjustment: 9
Effective length of query: 351
Effective length of database: 749
Effective search space:   262899
Effective search space used:   262899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)