BAC Information

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BAC

Clone NameMSMg01-406J21
Chromosome17 (Build37)
Map Location 58,083,376 - 58,083,614
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneAsah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406J21.T7 (MSMg01no406_j21.b1)MSMg01-406J21.TJ (MSMg01no406_j21.g1)
ACCAG504769AG504770
length763731
length of high quality
(start - end)
239 (76 - 314)488 (79 - 566)
definitionCHROMAT_FILE: MSMg01no406_j21.b1 PHD_FILE: MSMg01no406_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:59 2005CHROMAT_FILE: MSMg01no406_j21.g1 PHD_FILE: MSMg01no406_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCTATTTCCTCAAAGGGATGTCTGTAGGGAACTATCTTAATT
TTTTATTGTTTAAGAGAGTTCAGAACACTCTGGCTGGCAAGATCTTTAGG
GAGGTCCTGACTTATATAAGAAAGCTGGTTAAGTATAAGCTACCCCATAC
ATGAAGCAGCCTGCTGTACTTCTTTGTTTTTTTGTGATAGGTAATACTAT
GTAGAATAGCAAGCACACCTGGCTTCAAGATCCTTCCTTGATTTTTCCCT
CATCACTGGACTACAATTTATGATTGTACGCCAAAACAAACCTTCTTCTG
ATTGCTTTTGCCCAAAGTAGTTAAAGCCACACACACACACACACACTCAC
ACACACACACACTCACACACATACATTCCTTCACTTATAGAGAGAGAGAG
AGAGAGAGAGAGACAGAGAGACACCCAAAATAAGAGATAGTTTCTTACTA
ACATCTTGACCTCCCTTGCTTCATTTTTCCCTCTCCTCTCCCTGTTATTC
TCCCTGTCCCTCTTCCTAACCCCCCCCCCCCGCTCTGACCCCTGTTCCTT
TTCCCCCCCTCGTCTCTTCCCTCCTTATTACTCCCCTAATTCACCCTTTT
GAATTTGTCCTCCCCGGGCAGCAATAAACTTCTTGCTCATTGTTATCTAA
AATCCCTATTGTTCTCTGGACACCCCTCTTCTCATTTCGCCATGTACACT
ACAATATTTATTN
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCCGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCAGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCTTCCTG
AGTGAGGGAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
TAGTGGATATTATTCCAAATCCCAGGATACCCTATAATAAGATTCATTTT
GCTAAACATTTGATTTTTCTTAATTAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_j21.b1 MSMg01no406_j21.b1 CHROMAT_FILE:
MSMg01no406_j21.b1 PHD_FILE: MSMg01no406_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:59 2005
         (239 letters)



>mm_chr17_58083176_58083814
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctgtagggaactatcttaattttttattgtttaagagagttcagaacactctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtctgtagggaactatcttaattttttattgtttaagagagttcagaacactctggct 260

                                                                       
Query: 61  ggcaagatctttagggaggtcctgacttatataagaaagctggttaagtataagctaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagatctttagggaggtcctgacttatataagaaagctggttaagtataagctaccc 320

                                                                       
Query: 121 catacatgaagcagcctgctgtacttctttgtttttttgtgataggtaatactatgtaga 180
           ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct: 321 catacatgaagcagcctgctgtacttccttgtctttttgtgataggtaatgctatgtaga 380

                                                                      
Query: 181 atagcaagcacacctggcttcaagatccttccttgatttttccctcatcactggactac 239
           |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 atagtaagcacacctggcttcaagattcttccttgatttttccctcatcactggactac 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)