Query= MSMg01no407_i13.b1 MSMg01no407_i13.b1 CHROMAT_FILE:
MSMg01no407_i13.b1 PHD_FILE: MSMg01no407_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:12 2005
(591 letters)
>mm_chr17_41067658_41068648
Length = 991
Score = 1019 bits (527), Expect = 0.0
Identities = 581/621 (93%), Gaps = 34/621 (5%)
Strand = Plus / Plus
Query: 5 gaattctctcatggtcgagttctctgtttgtgttttatataacatggtagttttcacaga 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gaattctctcatggtggagttctctgtttgtgttttatataacatggtagttttcacaga 230
Query: 65 aagtgtaaatcatgaacataccttgggaagaatcaatattaacagaacaatttaaaagtt 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 231 aagtgtaaatcatgaacataccttgggaagaatcaatattaacggaacaatttaaaagtt 290
Query: 125 ttagactacaacccacacagacttgacttttactacttcactgatagaatcccaagtttc 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 291 ttagactacaacccacacagacttgatttttactacttcactgatagaatcccaagtttc 350
Query: 185 tacaatgtagaaaatctttgtgtgtgtgtgt----------------------------- 215
|||||||||||||||||||||||||||||||
Sbjct: 351 tacaatgtagaaaatctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 410
Query: 216 -----aatggtgatcatgaatcaatgaatatcttttctgaagttgaagaacactctattg 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgtgtaatggtgatcatgaatcaatgaatatcttttctgaagttgaagaacactctattg 470
Query: 271 ccttaaaatactgtcatggtataccaatcatgaatgaatatcttttctgaaatggaagaa 330
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccttaaaatactgtcatggtatgccaatcatgaatgaatatcttttctgaaatggaagaa 530
Query: 331 tacttccttaaaatagtcatggtataaatttggtatgtctgcccttggcatatgtgtgga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tacttccttaaaatagtcatggtataaatttggtatgtctgcccttggcatatgtgtgga 590
Query: 391 atgtacggtcttcactttggaaattctaggagtttgtaactggctgggtgatacacaggg 450
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 591 atgtacggtcttcactttggaaattctaggagttagtaactggctgggtgatacacaggg 650
Query: 451 gactagggtatgcttttaagtgacacctggtccctggtgccagtcttgtgttttgcttcc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gactagggtatgcttttaagtgacacctggtccctggtgccagtcttgtgttttgcttcc 710
Query: 511 tgaaaagcattgctcccactgccatgatgttctgcctcccaagggctcagagtcactgga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgaaaagcattgctcccactgccatgatgttctgcctcccaagggctcagagtcactgga 770
Query: 571 cttgggtcaaagctgctgagc 591
||||| |||||||||||||||
Sbjct: 771 cttggttcaaagctgctgagc 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_i13.g1 MSMg01no407_i13.g1 CHROMAT_FILE:
MSMg01no407_i13.g1 PHD_FILE: MSMg01no407_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:12 2005
(577 letters)
>mm_chr17_41230166_41231143
Length = 978
Score = 1011 bits (523), Expect = 0.0
Identities = 565/579 (97%), Gaps = 3/579 (0%)
Strand = Plus / Minus
Query: 1 aggacaacaacctgcatattaagactctgagacctgagatagttccacagaaaaaaagag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 778 aggacaacaacctgcatattaagactctgagacctgagatagttccacag-aaaaaagag 720
Query: 61 taacgtgtcttggtgactacagcactggctttccagagtagcatgccttctgcagaagaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 719 taacgtgtcttggtgactacagcactggctttccatagtagcatgccttctgcagaagaa 660
Query: 121 atggtgggc-aaaaaaaagtgttagcaagcaccataacataggatgctaacaatcccaaa 179
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 659 atggtgggcaaaaaaaaagtgttagcaagtaccataacataggatgctaacaatcccaaa 600
Query: 180 cacaggaaagtttcacagttagcacagttgaagcacagttggaggagcaattcaggatat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cacaggaaagtttcacagttagcacagttgaagcacagttggaggagcaattcaggatat 540
Query: 240 gcacaagcacactccactgaaggaagcttttattatcagcccaacaaatacagaatctag 299
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 539 gcacaagcacacgccactgaaggaagcttttactatcagcccaacaaatacagaatctag 480
Query: 300 gatgatactgttaagtgcca-gttttggaaaagctggcattcttactgcacaagtggcag 358
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatgatactgttaagtgccattttttggaaaagctggcattcttactgcacaagtggcag 420
Query: 359 aacacgacatgactttttcctctgggttttcatacatattccttcacagagatatagaaa 418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 419 aacacgacatgactttttcctctgggatttcatacatattccttcacagagatatagaaa 360
Query: 419 caactgccttacaaacctatcttggctcagcaaagccacggcgagtccagcatgcagaca 478
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 359 caactgtcttacaaacctatcttggctcagcaaagccacgacgagtccagcatgcagaca 300
Query: 479 cagataatgtcttctttaatataaaggtcttacagccccagagcatgataaaggatgcag 538
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 299 cagataatgtcttctttaatataaagttcttactgccccagagcatgataaaggatgcag 240
Query: 539 cagtcaagagcccaggaatcaatttcctactcctatggt 577
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 239 cagtcaagagcccaagaatcaatttcctactcctatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
