BAC Information

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BAC

Clone NameMSMg01-407P20
Chromosome17 (Build37)
Map Location 10,070,433 - 10,070,921
singlet/doubletsinglet
Overlap genenone
Upstream genePde10a, 1700010I14Rik, EG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407P20.T7 (MSMg01no407_p20.b1)MSMg01-407P20.TJ (MSMg01no407_p20.g1)
ACCAG505813AG505814
length772769
length of high quality
(start - end)		495 (43 - 537)464 (73 - 536)
definitionCHROMAT_FILE: MSMg01no407_p20.b1 PHD_FILE: MSMg01no407_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:48 2005CHROMAT_FILE: MSMg01no407_p20.g1 PHD_FILE: MSMg01no407_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATATCTTCTAATACCAATGGAAAAGCAGAACATGGTGACATACGCATG
TAACTCCAGAGCCAGAGAAAGAAAGGTAGAGACAAGAGGCTTGCTGGGAC
TTGCTGACCAGCCATCCTAGCCCTCCCAAATGGCAAACTTCATGGCCAGG
GAGAGACCTATTTCTATGTCCTCTGCACATGGACACAAATACTCATTATA
AACACACACACACACACACCACGCACATGTATTCTCACACAAACATGTAT
TATCTGAAATTACTAGATATGTTTTGAAGAATAAAACATACCCTTTGCCA
CTGAGAGCCAGTGGCAGTACAGACTGCTTTTGTTCCAGATGGCTTTTCTG
ACTTCTAGGGTGCTGGGTGGAACAAGAGCTGTTCATCCCCCGGCCTGCGG
TGAAACTCTGGCGGCTTTGCAAAGTCTTGTGGACAATGAGGGTTTGGCTG
ACCTGTGTCATAGGTGTTCTTTGCATGGCTTCGCTTGGCTGGGCTACATA
CCATCCACTTGTAAATGCCCTTGCCTGTTTGTCAAATANAACCTTAACCT
CCCTTGAAATTAAACCTCCTGAATCCTGGTGGAACAATGGTTCCCCCAAA
TTTTTCATCTGGAAGTGGAATACAATTGCTGGTCGCCTTTCTGAAAAGAA
TCCTGGGTTTTGAAAAAACCACACAGCTTTGTTTGGGATCTTTTGTTATC
ACTGGCCCGGTTGGTATAAACG

TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGTATATATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGATGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAANATTCC
TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAA
ACACAAAGGAACTCGCACAATATGTACTCACTAAAAAGTGGATATTAGCC
CAGAAACTTAGGATACCCCAGATATAAGATACAATTTTGCTAACCCCTGG
AATTCTCGATGAAAGAAGACCCAAGGGTGGGGTTTTTGCCCCTCCTTAAA
AAGGGGAAAAATACCCCCGGGAGGGTTTACGAAAAAAAATTTTGTTTTTT
GCCAATTGGGTGGCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_p20.b1 MSMg01no407_p20.b1 CHROMAT_FILE:
MSMg01no407_p20.b1 PHD_FILE: MSMg01no407_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:48 2005
         (495 letters)



>mm_chr17_10070227_10071121
          Length = 895

 Score =  907 bits (469), Expect = 0.0
 Identities = 485/491 (98%), Gaps = 2/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatcttctaataccaatggaaaagcagaacatggtgacatacgcatgtaactc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatatcttctaataccaatggaaaagcagaacatggtgacatacgcatgtaactc 266

                                                                       
Query: 65  cagagccagagaaagaaaggtagagacaagaggcttgctgggacttgctgaccagccatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagagccagagaaagaaaggtagagacaagaggcttgctgggacttgctgaccagccatc 326

                                                                       
Query: 125 ctagccctcccaaatggcaaacttcatggccagggagagacctatttctatgtcctctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctagccctcccaaatggcaaacttcatggccagggagagacctatttctatgtcctctgc 386

                                                                       
Query: 185 acatggacacaaatactcattataaacacacacacacacacaccacgcacatgtattctc 244
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 387 acatggacacaaatactcattataa--acacacacacacacaccacgcacatgtattctc 444

                                                                       
Query: 245 acacaaacatgtattatctgaaattactagatatgttttgaagaataaaacatacccttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacaaacatgtattatctgaaattactagatatgttttgaagaataaaacatacccttt 504

                                                                       
Query: 305 gccactgagagccagtggcagtacagactgcttttgttccagatggcttttctgacttct 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 gccactgagagccagtggcagtacagactgcctttgttccagatggcttttctgacttct 564

                                                                       
Query: 365 agggtgctgggtggaacaagagctgttcatcccccggcctgcggtgaaactctggcggct 424
           ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 565 agggtgccgggtggaacaagagctgttcatcccccggcctgcggtgaagctctggcagct 624

                                                                       
Query: 425 ttgcaaagtcttgtggacaatgagggtttggctgacctgtgtcataggtgttctttgcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgcaaagtcttgtggacaatgagggtttggctgacctgtgtcataggtgttctttgcat 684

                      
Query: 485 ggcttcgcttg 495
           |||||||||||
Sbjct: 685 ggcttcgcttg 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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