TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAAATCCGCGGAATT
CACCCATGTTTCGGAAAAGTGCTGTGTTGTTTTTCTCTGAGCAAGCTTAA
TGTCCTTCAGGTCCATTACCACACGCCCCTTGTCACATCCCAAGCCAGAC
AGGTGCTCCTGACCCTGATACAGAACAATTTTCTCCTAGTCACTACCTTC
TCCCATAACTTACTAAATGTCCACAGGGACGATAACAACGAAGGTCATAG
GAGGCCATCTCTCTGAACAACTAATGAGCTATTCAGAAAGTCAGCTGTGT
TGATTCTTGAATGGCACCAATGGCCCAAGGCAGACACCCCTCACTGCCAG
CCTTTCCTGGTGGTGGCAATGGTGGCCTTGAGCACAGACCTTAAATTATG
GGGATGTAACAGATTTTGTTTGTGGGGCTCTGCAACATCATGATAAAGTC
TGGTCACCAAATTGTACTATCCTCTCTCTGTAAGTTGCTGTGTTCAAAAG
GATGAATGTAGCAAAATAATAACATGTGATGTATGGGCTGACAGCCTAAA
NAGACTTAGGGTAGAAACACGTAAGACATCCTGGCTAAAACTAATGGTTT
AAATTTTGATTGGCCCCCATTGGACACAGGGTTCTCCAACTGGGGGGGGG
GGACCCCTGGGCCATTGATTCCTGGTTTAAAGAGTTTCCAATTAAAAAAA
CAAAACCCCCCGTCTAAATCCAAAATTTTTGTGTAATGACGCCCCTCCAT
TTTTCTTTTGTTGTTCGCCCCG

CCCCCGGGNNNNNNNNNNNNNCGATGATATNGTAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCTGAGGAT
ACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATC
AGGGAAATGCAAATCAAACAACCCTAAGATTCCACTCACACAGTCAGAAT
GTCTAAGATCAAAATTCAGGTGACAGCAAATGCTGNCGAAAGAATGTGAA
AAAAAAGAAAACTCCTCCATTGTTGTGGGAATTGGCAAGTTTTGAACAAC
CCCTCTTGGAAATCCCCGTCTGGGGGGTTCCCCCCCAAAAAAATTTTTGA
AACAAAAAAACACCACCCCGGGAAAGAATCCCCCCGCGAAAAAACCCCCT
CCCCCCCGTGGGGGGGTTTTATTTATTCCCCACAAGAAAAAAGCGCCCCC
CCCCCCCCTTGTGTGTAAAAAAAAAAAAATAANAAAAAGTGGGGTCGCCC
CCCCCACCATATTTTTGTTTTTTTTAAAAAAAAAAGNNNCNAGAAGTTTT
TTTTTTTTTTATAAAAAAAAAACCACCCCCCCCACGCGGGTGTGGGGTGT
CGNTGTTTTAAAAGAAA

Query= MSMg01no408_e13.b1 MSMg01no408_e13.b1 CHROMAT_FILE:
MSMg01no408_e13.b1 PHD_FILE: MSMg01no408_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:13 2005
         (423 letters)



>mm_chr17_81199116_81199938
          Length = 823

 Score =  756 bits (391), Expect = 0.0
 Identities = 415/423 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgtgttgtttttctctgagcaagcttaatgtccttcaggtccattaccacacgcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 gctgtgttgtttttctctgagcaagcttaatgtccttcaggtccattagtacacgcccct 260

                                                                       
Query: 61  tgtcacatcccaagccagacaggtgctcctgaccctgatacagaacaattttctcctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcacatcccaagccagacaggtgctcctgaccctgatacagaacaattttctcctagt 320

                                                                       
Query: 121 cactaccttctcccataacttactaaatgtccacagggacgataacaacgaaggtcatag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaccttctcccataacttactaaatgtccacagggacgataacaacgaaggtcatag 380

                                                                       
Query: 181 gaggccatctctctgaacaactaatgagctattcagaaagtcagctgtgttgattcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gaggccatctctctgaacaactaatgagctattcagaaagtcagctgtgttgatttttga 440

                                                                       
Query: 241 atggcaccaatggcccaaggcagacacccctcactgccagcctttcctggtggtggcaat 300
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 441 atggcaccaatggcccaaggcagacacccctcacagccagcctctcctggtggtggcaat 500

                                                                       
Query: 301 ggtggccttgagcacagaccttaaattatggggatgtaacagattttgtttgtggggctc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ggtggccttgagcacagaccttaaattatggggaagtaacagattttgtttgtggggctc 560

                                                                       
Query: 361 tgcaacatcatgataaagtctggtcaccaaattgtactatcctctctctgtaagttgctg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaatatcatgataaagtctggtcaccaaattgtactatcctctctctgtaagttgctg 620

              
Query: 421 tgt 423
           |||
Sbjct: 621 tgt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)